Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90244 | Canola | nucleus | 94.6 | 94.6 |
| CDY09599 | Canola | nucleus | 79.2 | 83.19 |
| CDY26269 | Canola | nucleus | 79.4 | 81.86 |
| AT1G30320.1 | Thale cress | nucleus, plastid | 79.4 | 78.0 |
| VIT_10s0003g04090.t01 | Wine grape | nucleus | 58.8 | 55.89 |
| KRH42599 | Soybean | nucleus | 57.4 | 53.15 |
| KRH58701 | Soybean | nucleus | 56.6 | 52.41 |
| KRH44798 | Soybean | nucleus | 56.8 | 51.54 |
| PGSC0003DMT400031464 | Potato | nucleus | 53.0 | 51.06 |
| Solyc08g045640.2.1 | Tomato | mitochondrion | 45.2 | 45.75 |
| GSMUA_Achr5P26590_001 | Banana | nucleus | 39.6 | 38.9 |
| Os04t0620200-01 | Rice | nucleus, plastid | 41.0 | 38.53 |
| Os12t0613600-01 | Rice | nucleus | 32.8 | 38.41 |
| CDY17607 | Canola | nucleus | 34.0 | 38.29 |
| CDY03066 | Canola | nucleus | 30.8 | 38.21 |
| CDY09386 | Canola | nucleus | 30.6 | 38.15 |
| CDY15819 | Canola | nucleus | 33.4 | 37.78 |
| Zm00001d041496_P001 | Maize | nucleus | 28.4 | 37.27 |
| EES11442 | Sorghum | nucleus, plastid | 39.4 | 36.96 |
| GSMUA_Achr10P... | Banana | nucleus | 39.4 | 36.35 |
| TraesCS2B01G485700.1 | Wheat | nucleus, plastid | 38.2 | 36.17 |
| TraesCS2A01G464000.1 | Wheat | nucleus, plastid | 37.8 | 35.93 |
| TraesCS2D01G464900.1 | Wheat | nucleus, plastid | 38.0 | 35.92 |
| KXG23993 | Sorghum | nucleus | 32.8 | 35.65 |
| HORVU2Hr1G103570.7 | Barley | nucleus, plastid | 37.0 | 34.91 |
| Zm00001d002274_P001 | Maize | nucleus, plastid | 39.2 | 34.69 |
| TraesCS5A01G040500.1 | Wheat | nucleus | 30.4 | 33.85 |
| TraesCS5D01G047600.3 | Wheat | cytosol | 30.2 | 33.71 |
| CDY32543 | Canola | nucleus | 23.6 | 33.43 |
| CDY01823 | Canola | nucleus | 23.4 | 33.05 |
| CDY12657 | Canola | cytosol | 23.2 | 32.86 |
| TraesCS5B01G041700.1 | Wheat | mitochondrion, nucleus | 30.6 | 32.48 |
| CDX96080 | Canola | nucleus | 23.0 | 32.39 |
| CDY62472 | Canola | nucleus | 56.6 | 32.38 |
| CDY62474 | Canola | nucleus | 56.6 | 32.38 |
| HORVU5Hr1G009780.6 | Barley | cytosol | 27.8 | 28.72 |
| CDY68168 | Canola | nucleus | 18.6 | 22.2 |
| CDY08209 | Canola | nucleus | 18.4 | 21.96 |
| CDX79905 | Canola | nucleus | 11.2 | 20.82 |
| CDY48774 | Canola | nucleus | 11.0 | 20.37 |
| CDX72021 | Canola | nucleus | 11.0 | 20.22 |
| CDY06095 | Canola | nucleus | 11.2 | 19.11 |
| CDY36609 | Canola | cytosol | 19.2 | 14.93 |
| CDY24070 | Canola | extracellular | 19.6 | 13.39 |
Protein Annotations
| EnsemblPlants:CDY12047 | EnsemblPlantsGene:GSBRNA2T00060995001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF17 |
| PFAM:PF03763 | ProteinID:CDY12047 | ProteinID:CDY12047.1 | SEG:seg | UniParc:UPI0004EDF685 | UniProt:A0A078FGG0 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC03g59630DBnaC03g59630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGG0]
Coordinates
chrLK032017:+:23454..26414
Molecular Weight (calculated)
56306.9 Da
IEP (calculated)
9.422
GRAVY (calculated)
-1.047
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYERIEKVQ QKSILSPTKL RMKLMGPHNN KKREGSNNNS SRTSPVRLEV SDGTEFSKNS LLASKSDSYE DDNVAASKTD KGVAKLSVLD LSDTQASRHR
101: SEGLTRETNQ PKPQQLKKAD LSMALRPQED ENVDYDSNAS SSSFEFHGGV RGERSNQNHV SRAYPSRQMP SKWNDAEKWI MSRQNMVMRK NGQGNRLPAR
201: VVTDNTVYEH NKSRMQTDGF EKFPRYVPTV PHPIPTQGYG GNLLIEQSTQ SNGLVDTTKD SSRDETPAGP VIRSVCMRDM GTDMTPIPSQ EPSRSVTPFG
301: ATTPLRSPTS SLPSTPRGGQ QAESQDLSAN TKRELSEEEM KAKTRREIVT LGVRLGKMNI AAWASKEEEE NNKNNVDAEE TQRIEFDKRA IAWEEAEKSK
401: HNARYKREEI RIQAWESQEK AKLEAEMQRI EAKVEQMKAE AEAKIVKKIA MAKQRSEEKR ASAEARKARD AEKAVAEAEY IRETGQIPAS GYKICCGWFS
101: SEGLTRETNQ PKPQQLKKAD LSMALRPQED ENVDYDSNAS SSSFEFHGGV RGERSNQNHV SRAYPSRQMP SKWNDAEKWI MSRQNMVMRK NGQGNRLPAR
201: VVTDNTVYEH NKSRMQTDGF EKFPRYVPTV PHPIPTQGYG GNLLIEQSTQ SNGLVDTTKD SSRDETPAGP VIRSVCMRDM GTDMTPIPSQ EPSRSVTPFG
301: ATTPLRSPTS SLPSTPRGGQ QAESQDLSAN TKRELSEEEM KAKTRREIVT LGVRLGKMNI AAWASKEEEE NNKNNVDAEE TQRIEFDKRA IAWEEAEKSK
401: HNARYKREEI RIQAWESQEK AKLEAEMQRI EAKVEQMKAE AEAKIVKKIA MAKQRSEEKR ASAEARKARD AEKAVAEAEY IRETGQIPAS GYKICCGWFS
001: MDYERIQKVQ KSIISPTKLR MKLMGPLNNM KREGSKSNSN SSRTSPSRLQ IPDDSEFSKN SLLASNSYSD DDVAATTTDI EVAKLPNEPV LYPTENDNQG
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8G3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.