Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17607 | Canola | nucleus | 92.56 | 84.01 |
| Bra024828.1-P | Field mustard | nucleus | 93.8 | 84.0 |
| CDY09386 | Canola | nucleus | 76.92 | 77.31 |
| CDY15819 | Canola | nucleus | 81.64 | 74.43 |
| AT2G02170.2 | Thale cress | nucleus | 85.86 | 71.19 |
| VIT_01s0010g01760.t01 | Wine grape | nucleus | 65.01 | 51.37 |
| KRH58560 | Soybean | nucleus | 64.02 | 50.89 |
| KRH42459 | Soybean | nucleus | 64.02 | 50.59 |
| GSMUA_Achr5P11780_001 | Banana | cytosol | 38.46 | 47.99 |
| Solyc01g008180.2.1 | Tomato | nucleus | 59.31 | 45.79 |
| GSMUA_Achr1P02030_001 | Banana | nucleus | 54.84 | 45.1 |
| GSMUA_Achr11P... | Banana | nucleus | 53.6 | 43.99 |
| TraesCS6D01G053500.1 | Wheat | nucleus | 52.36 | 41.45 |
| TraesCS6A01G046400.1 | Wheat | nucleus | 52.11 | 41.34 |
| Os02t0116800-01 | Rice | nucleus | 52.11 | 41.18 |
| TraesCS6B01G062500.1 | Wheat | nucleus | 51.86 | 41.14 |
| HORVU0Hr1G040310.2 | Barley | cytosol, mitochondrion, nucleus | 51.86 | 40.66 |
| GSMUA_Achr2P10980_001 | Banana | nucleus | 42.43 | 40.62 |
| Os03t0120200-01 | Rice | nucleus | 42.43 | 40.43 |
| KXG40319 | Sorghum | nucleus | 41.69 | 39.62 |
| GSMUA_Achr5P19220_001 | Banana | nucleus | 40.94 | 39.01 |
| Zm00001d027403_P001 | Maize | nucleus | 40.94 | 38.92 |
| TraesCS5A01G517700.1 | Wheat | nucleus | 40.45 | 38.63 |
| TraesCS4D01G343800.1 | Wheat | nucleus | 39.95 | 38.15 |
| Zm00001d054034_P001 | Maize | nucleus | 52.11 | 38.11 |
| TraesCS4B01G349100.1 | Wheat | nucleus | 39.7 | 37.74 |
| Zm00001d048481_P001 | Maize | cytosol, mitochondrion, nucleus | 39.21 | 37.53 |
| EES06158 | Sorghum | nucleus, plastid | 52.61 | 37.19 |
| CDY32543 | Canola | nucleus | 31.51 | 35.98 |
| CDY12657 | Canola | cytosol | 31.27 | 35.69 |
| CDY01823 | Canola | nucleus | 31.02 | 35.31 |
| CDX96080 | Canola | nucleus | 30.77 | 34.93 |
| HORVU4Hr1G085140.6 | Barley | nucleus, plastid | 38.96 | 32.51 |
| CDY09599 | Canola | nucleus | 37.22 | 31.51 |
| CDX90244 | Canola | nucleus | 38.71 | 31.2 |
| CDY12047 | Canola | nucleus | 38.21 | 30.8 |
| CDY26269 | Canola | nucleus | 36.97 | 30.72 |
| CDX79905 | Canola | nucleus | 15.14 | 22.68 |
| CDY48774 | Canola | nucleus | 14.89 | 22.22 |
| CDX72021 | Canola | nucleus | 14.39 | 21.32 |
| CDY06095 | Canola | nucleus | 14.64 | 20.14 |
| CDY08209 | Canola | nucleus | 20.6 | 19.81 |
| CDY68168 | Canola | nucleus | 20.6 | 19.81 |
| CDY62472 | Canola | nucleus | 29.53 | 13.62 |
| CDY62474 | Canola | nucleus | 29.53 | 13.62 |
| CDY36609 | Canola | cytosol | 21.59 | 13.53 |
| CDY24070 | Canola | extracellular | 21.59 | 11.89 |
Protein Annotations
| EnsemblPlants:CDY03066 | EnsemblPlantsGene:GSBRNA2T00115402001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF1 |
| PFAM:PF03763 | ProteinID:CDY03066 | ProteinID:CDY03066.1 | SEG:seg | UniParc:UPI0004EE8B9F | MapMan:35.2 |
Description
BnaC07g21610D
Coordinates
chrLK031939:+:743793..745790
Molecular Weight (calculated)
44767.0 Da
IEP (calculated)
10.124
GRAVY (calculated)
-0.808
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYERIGKTQ VTSGGGGGLS PRKLRSMLLL GADRKKKEDM IEPTPIVRSG SNQSDDLVAS GSDDCKDVDV VCEITTDYDN VSEEVKSVSA SLFEFQKTEK
101: DKAAQRLPTR SFSKPAPSKW DDAQKWIASP TSNRPKTAAG QVHVSKKGPS FGRQSSMKIL EKFVSWEVDS YVKPVLTVDN SIATEVNLSR HDSSIATAFA
201: QPPSTARSVS MRDMGTEMTP IASQEPSRNG TPIRATTPIR SPITSEPSSP GRRQASSASQ MSNKELSEKE LQMKTRREIM ELGTQLGNVS EARASAWEEA
301: EKAKHMARFR REEMKIQAWE NHQKAKSEAE MRKTEVEVER IKGRAQDRLM NKLAEIERKA EGKRAAAEAK KIRQAAKTEK QAEQIRRTGK VPSLMFSCFS
401: FCS
101: DKAAQRLPTR SFSKPAPSKW DDAQKWIASP TSNRPKTAAG QVHVSKKGPS FGRQSSMKIL EKFVSWEVDS YVKPVLTVDN SIATEVNLSR HDSSIATAFA
201: QPPSTARSVS MRDMGTEMTP IASQEPSRNG TPIRATTPIR SPITSEPSSP GRRQASSASQ MSNKELSEKE LQMKTRREIM ELGTQLGNVS EARASAWEEA
301: EKAKHMARFR REEMKIQAWE NHQKAKSEAE MRKTEVEVER IKGRAQDRLM NKLAEIERKA EGKRAAAEAK KIRQAAKTEK QAEQIRRTGK VPSLMFSCFS
401: FCS
001: MDYERIGKTQ VTSSGGGFSP GKLRSMLLLG VDRKKNEEEE STPTMRSGSN QIDDPRVYVA SGLDDCKDVD VVSEITDCST SGIARSISLG LQEYSDYDNV
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
Arabidopsis Description
At2g02170/F5O4.6 [Source:UniProtKB/TrEMBL;Acc:Q9ZUM1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.