CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039695.1-P	Field mustard	cytosol	97.82	92.77
CDY24070	Canola	extracellular	97.82	85.93
CDY08209	Canola	nucleus	52.41	80.43
CDY68168	Canola	nucleus	51.63	79.24
AT1G53860.1	Thale cress	nucleus	50.39	73.3
PGSC0003DMT400023636	Potato	nucleus	20.84	57.27
VIT_09s0002g00360.t01	Wine grape	nucleus	31.73	44.74
Solyc03g123590.2.1	Tomato	nucleus	29.7	40.99
GSMUA_Achr10P...	Banana	nucleus	28.15	40.22
TraesCS2B01G363600.1	Wheat	plastid	25.82	40.19
TraesCS2D01G343900.1	Wheat	plastid	25.82	40.0
KRH47718	Soybean	nucleus	29.08	39.87
HORVU2Hr1G084090.2	Barley	plastid	25.82	39.71
KRH06283	Soybean	cytosol	29.08	39.53
GSMUA_Achr2P07310_001	Banana	nucleus	30.02	38.76
Os11t0616300-01	Rice	nucleus	29.08	37.93
Zm00001d048829_P001	Maize	plastid	24.73	34.57
EES10116	Sorghum	nucleus, plastid	26.28	33.07
CDY32543	Canola	nucleus	13.69	24.93
CDY12657	Canola	cytosol	13.69	24.93
CDY01823	Canola	nucleus	13.69	24.86
CDX96080	Canola	nucleus	13.69	24.79
CDY09386	Canola	nucleus	14.31	22.94
CDY15819	Canola	nucleus	15.09	21.95
CDY03066	Canola	nucleus	13.53	21.59
CDY17607	Canola	nucleus	14.77	21.4
CDY09599	Canola	nucleus	15.4	20.8
CDY26269	Canola	nucleus	15.09	20.0
CDY12047	Canola	nucleus	14.93	19.2
CDX90244	Canola	nucleus	14.62	18.8
CDX79905	Canola	nucleus	7.62	18.22
CDY48774	Canola	nucleus	7.47	17.78
CDX72021	Canola	nucleus	6.84	16.18
CDY06095	Canola	nucleus	7.0	15.36
CDY62474	Canola	nucleus	13.53	9.95
CDY62472	Canola	nucleus	13.53	9.95

Protein Annotations

MapMan:19.2.6.1.1.5	Gene3D:3.60.20.10	GO:A0A078HGT5	UniProt:A0A078HGT5	EnsemblPlants:CDY36609	ProteinID:CDY36609
ProteinID:CDY36609.1	ncoils:Coil	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0043161
GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00062317001	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF03763	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR31471	PANTHER:PTHR31471:SF3
InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha_type_5	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Remorin_C	SMART:SM00948
SUPFAM:SSF56235	UniParc:UPI0004EE43B2	SEG:seg	:	:	:

Description

BnaC06g06620DProteasome endopeptidase complex [Source:UniProtKB/TrEMBL;Acc:A0A078HGT5]

Coordinates

chrLK032379:-:132115..137563

Molecular Weight (calculated)

72236.8 Da

IEP (calculated)

6.474

GRAVY (calculated)

-0.669

Length

643 amino acids

Sequence
(BLAST)

001: MDITRNSITK LHLQTQSLFP PNMERTLDVE PRMSTNPFAE DFIKSLPISS NQSSNSSSSE MVNERRQSFS TQKSIGEGRS SGQRKVMLME SPCTPGRGVF
101: SFSSSLSGRR RNFPSKWDDA EKWVTSSHES PAHSLKSHHI LKDKLANEVL STEGFIFRDL EEEEEAQVQH RDMGTEMTPV GSVTTSRCHT PFESTSPARH
201: NTPSNMSGPL TETKNVIDIS EFANKLRLSG SAATQYYNSV TSHWNSREEE EEEISKSLRH SDMESELRRS VSVAVWDDED DKIKFCQRYQ REEAKIKAWV
301: NLQDAKAEAQ SRKLEVKIQK MRSNFEEKMM KRMDTVHRRA EEWRATARQQ HAEQLKRAAE TARKLSNRRG YLVAGRSSCG CLPCNNISSN SPINQLTLTR
401: SKSRKKMFLT RTEYDRGVNT FSPEGRLFQV EYAIEAIKLG STAIGVKTKE GVVLAVEKRI TSPLLEPSSV EKIMEIDDHI GCAMSGLIAD ARTLVEHARV
501: ETQNHRFSYG EPMTVESTTQ ALCDLALRFG EGDEESMSRP FGVSLLIAGH DENGPSLYYT DPSGTFWQCN AKAIGSGSEG ADSSLQEQFN KDLSLSEAET
601: IAVSILKQVM EEKVTPNNVD IAKVAPAYHL YTPEEVEAVI SRL

Best Arabidopsis Sequence Match ( AT1G53860.1 )
(BLAST)

001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH

Arabidopsis Description

At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.