CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12047	Canola	nucleus	94.6	94.6
Bra010777.1-P	Field mustard	nucleus	94.2	87.38
CDY09599	Canola	nucleus	79.6	83.61
CDY26269	Canola	nucleus	79.8	82.27
AT1G30320.1	Thale cress	nucleus, plastid	80.2	78.78
VIT_10s0003g04090.t01	Wine grape	nucleus	58.0	55.13
KRH42599	Soybean	nucleus	57.4	53.15
KRH58701	Soybean	nucleus	56.6	52.41
KRH44798	Soybean	nucleus	56.8	51.54
PGSC0003DMT400031464	Potato	nucleus	52.0	50.1
Solyc08g045640.2.1	Tomato	mitochondrion	45.0	45.55
CDY03066	Canola	nucleus	31.2	38.71
CDY17607	Canola	nucleus	34.0	38.29
CDY09386	Canola	nucleus	30.6	38.15
GSMUA_Achr5P26590_001	Banana	nucleus	38.8	38.11
Os04t0620200-01	Rice	nucleus, plastid	40.4	37.97
Os12t0613600-01	Rice	nucleus	32.4	37.94
CDY15819	Canola	nucleus	33.2	37.56
Zm00001d041496_P001	Maize	nucleus	28.2	37.01
TraesCS2B01G485700.1	Wheat	nucleus, plastid	38.6	36.55
TraesCS2A01G464000.1	Wheat	nucleus, plastid	38.2	36.31
TraesCS2D01G464900.1	Wheat	nucleus, plastid	38.4	36.29
EES11442	Sorghum	nucleus, plastid	38.6	36.21
GSMUA_Achr10P...	Banana	nucleus	39.2	36.16
KXG23993	Sorghum	nucleus	32.8	35.65
HORVU2Hr1G103570.7	Barley	nucleus, plastid	37.4	35.28
Zm00001d002274_P001	Maize	nucleus, plastid	38.6	34.16
TraesCS5A01G040500.1	Wheat	nucleus	30.6	34.08
TraesCS5D01G047600.3	Wheat	cytosol	30.4	33.93
CDY32543	Canola	nucleus	23.6	33.43
CDY01823	Canola	nucleus	23.6	33.33
CDY12657	Canola	cytosol	23.2	32.86
CDY62474	Canola	nucleus	57.0	32.61
CDY62472	Canola	nucleus	57.0	32.61
TraesCS5B01G041700.1	Wheat	mitochondrion, nucleus	30.6	32.48
CDX96080	Canola	nucleus	23.0	32.39
HORVU5Hr1G009780.6	Barley	cytosol	27.6	28.51
CDY68168	Canola	nucleus	18.2	21.72
CDY08209	Canola	nucleus	18.0	21.48
CDX79905	Canola	nucleus	11.0	20.45
CDY48774	Canola	nucleus	10.8	20.0
CDX72021	Canola	nucleus	10.8	19.85
CDY06095	Canola	nucleus	11.0	18.77
CDY36609	Canola	cytosol	18.8	14.62
CDY24070	Canola	extracellular	19.2	13.11

Protein Annotations

EnsemblPlants:CDX90244	EnsemblPlantsGene:GSBRNA2T00150810001	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF17
PFAM:PF03763	ProteinID:CDX90244	ProteinID:CDX90244.1	SEG:seg	UniParc:UPI0004EE5EE1	MapMan:35.2

Description

BnaA08g17400D

Coordinates

chrLK031862:+:848276..851168

Molecular Weight (calculated)

56082.6 Da

IEP (calculated)

9.432

GRAVY (calculated)

-1.039

Length

500 amino acids

Sequence
(BLAST)

001: MEYERIEKVK QKSILSPTKL RMKLMGPHNN KKREGSNNNS SRTSPVRLQV SDGTEFSKNS LLASKSDSYD DDNVAASATD IGVAKLPVLD LSDTQASRHG
101: SEGLTRETNQ PKPQQLKKTD LSLALRPQED ENLDYDSNAS SSSFEFHGGV RGERSNQNHV SRAYPSRQMP SKWNDAEKWI MSRQNMVMRK NGQGNRMPAR
201: VMTDNAGYEH NKSRMQTDGF EKFPNYVPTV PRPILTQGYG GSLLIEQSTQ SNGLVDTTKD SSRDETPAGP VIRSVCMRDM GTDMTPIPSQ EPSRSVTPVG
301: ATTPLRSPTS SLPSTPRGGQ QEESQDPSAN TKRELSEEEM KAKTRREIVT LGVRLGKMNI AAWASNEEEE SNKNNVDAEE TQRIEFDKRA SAWEEAEKSK
401: HNARYKREEI RIQAWESQEK AKLEAEMQRI EAKVEQMKAE AEARIVKKIA MAKQRSEEKR ASAEARKARD AEKAVAEAKY IRETGRIPAS GYKICCGWFS

Best Arabidopsis Sequence Match ( AT1G30320.1 )
(BLAST)

001: MDYERIQKVQ KSIISPTKLR MKLMGPLNNM KREGSKSNSN SSRTSPSRLQ IPDDSEFSKN SLLASNSYSD DDVAATTTDI EVAKLPNEPV LYPTENDNQG
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8G3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.