Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62472 | Canola | nucleus | 100.0 | 100.0 |
| CDX90244 | Canola | nucleus | 32.61 | 57.0 |
| CDY12047 | Canola | nucleus | 32.38 | 56.6 |
| CDY09599 | Canola | nucleus | 27.69 | 50.84 |
| CDY26269 | Canola | nucleus | 27.8 | 50.1 |
| Os12t0613600-01 | Rice | nucleus | 14.65 | 29.98 |
| CDY03066 | Canola | nucleus | 13.62 | 29.53 |
| CDY17607 | Canola | nucleus | 14.99 | 29.5 |
| TraesCS2B01G485700.1 | Wheat | nucleus, plastid | 17.73 | 29.36 |
| TraesCS2A01G464000.1 | Wheat | nucleus, plastid | 17.62 | 29.28 |
| Os04t0620200-01 | Rice | nucleus, plastid | 17.73 | 29.14 |
| TraesCS2D01G464900.1 | Wheat | nucleus, plastid | 17.62 | 29.11 |
| EES11442 | Sorghum | nucleus, plastid | 17.51 | 28.71 |
| Zm00001d041496_P001 | Maize | nucleus | 12.36 | 28.35 |
| CDY15819 | Canola | nucleus | 14.3 | 28.28 |
| CDY09386 | Canola | nucleus | 12.93 | 28.18 |
| KXG23993 | Sorghum | nucleus | 14.76 | 28.04 |
| HORVU2Hr1G103570.7 | Barley | nucleus, plastid | 16.82 | 27.74 |
| GSMUA_Achr5P26590_001 | Banana | nucleus | 16.13 | 27.7 |
| GSMUA_Achr10P... | Banana | nucleus | 17.16 | 27.68 |
| Zm00001d002274_P001 | Maize | nucleus, plastid | 17.62 | 27.26 |
| TraesCS5A01G040500.1 | Wheat | nucleus | 13.5 | 26.28 |
| TraesCS5D01G047600.3 | Wheat | cytosol | 13.39 | 26.12 |
| TraesCS5B01G041700.1 | Wheat | mitochondrion, nucleus | 13.62 | 25.27 |
| HORVU5Hr1G009780.6 | Barley | cytosol | 12.47 | 22.52 |
| CDY12657 | Canola | cytosol | 8.92 | 22.1 |
| CDY32543 | Canola | nucleus | 8.92 | 22.1 |
| CDY01823 | Canola | nucleus | 8.92 | 22.03 |
| CDX96080 | Canola | nucleus | 8.92 | 21.97 |
| CDY68168 | Canola | nucleus | 7.44 | 15.51 |
| CDY08209 | Canola | nucleus | 7.44 | 15.51 |
| CDX79905 | Canola | nucleus | 4.35 | 14.13 |
| CDY48774 | Canola | nucleus | 4.35 | 14.07 |
| CDX72021 | Canola | nucleus | 4.23 | 13.6 |
| CDY36609 | Canola | cytosol | 9.95 | 13.53 |
| CDY06095 | Canola | nucleus | 4.35 | 12.97 |
| CDY24070 | Canola | extracellular | 10.07 | 12.02 |
Protein Annotations
| EnsemblPlants:CDY62474 | EnsemblPlantsGene:GSBRNA2T00036317001 | Gene3D:3.40.50.300 | InterPro:P-loop_NTPase | InterPro:RNA-helicase_DEAD-box_CS | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF17 | ProteinID:CDY62472.1 | ProteinID:CDY62474 | ProteinID:CDY62474.1 | ScanProsite:PS00039 | SEG:seg |
| SUPFAM:SSF52540 | UniParc:UPI0004EDF7B9 | UniProt:A0A078JAI9 | MapMan:35.1 | : | : |
Description
BnaC01g44880DBnaC01g44870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAI9]
Coordinates
chrLK034149:-:29677..32556
Molecular Weight (calculated)
100165.0 Da
IEP (calculated)
8.717
GRAVY (calculated)
-0.885
Length
874 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYERIEKVQ KSILSPTNLR MKLMGPHNNK NREGSNNNSS RTSPVHLQVS DGTEFSKNRL LASKSDSYDG DNVAASIKPQ EDKNLDYDRN TSSSSFEFHG
101: GIGGERSNQN HVSREYSSRQ MSSKWNDAEK WIMSRQNMLT NYVRTVSHPV LTQGYGGNFF IDQSTQSNDT TKDSSRNDTP AGPVTRSVCM RDMRTDMTPL
201: PSQEPSRSVT PVGATTPLRS LTSSLLSTPR GGQQEESQDP SANTKRELSE EEIKVKTRRE IVTLGVRLGK MNIAAWASKQ EEERNENKVD AEDTQRIEFD
301: KQANAWEEET KSKITQGCEI VRLIDFLERW YAVLNQCYYV VLDEADRMID VGFEPQVAGV LDVMLSSNLK PENEEEEFGV DRLSRKYLRN PVVLTNGTAG
401: KAKNLMTPHM FMMKESDKFF RLQKLLDELD DKTAIVFVNR MKIRETSRIP IVGDSDSNES QITWCMNKQE AIELLSCEAD NMVGTEAVRQ ILYHIIGERV
501: EYKKLVSGLK LGLEDPYRLA HKENESLRTV WRNVGLDTAA SYFVRYVITV NVLREQNTKV ETFKLGKVSA KKWKRSRSKM EERNLHAGYL TTPASKKQIV
601: KNDDPEEKED FMETDLEKPE DSTKTAEKPL AESKKEKAQK GSAKTAAKKR LDQSVHSYTK KKNSEGGSMD MHIAESSKSK KNNSRAMTLS TKESEQTLKS
701: HPKWKQTAVK EVESNKSENG EELDGKRVNI RWPLDKKFYD GVIKSNNILN EMHLASYSDV DFEEHKKERW EIISDEEVSK ISRIHGKFRD VVRSVYSDDQ
801: EHGMEKRKRR TCCLKKRETM VLYSCEVEFM VSMKALGRLK FKEMRGLFDI EDLSKMRFKL KGENVGLSLK EKET
101: GIGGERSNQN HVSREYSSRQ MSSKWNDAEK WIMSRQNMLT NYVRTVSHPV LTQGYGGNFF IDQSTQSNDT TKDSSRNDTP AGPVTRSVCM RDMRTDMTPL
201: PSQEPSRSVT PVGATTPLRS LTSSLLSTPR GGQQEESQDP SANTKRELSE EEIKVKTRRE IVTLGVRLGK MNIAAWASKQ EEERNENKVD AEDTQRIEFD
301: KQANAWEEET KSKITQGCEI VRLIDFLERW YAVLNQCYYV VLDEADRMID VGFEPQVAGV LDVMLSSNLK PENEEEEFGV DRLSRKYLRN PVVLTNGTAG
401: KAKNLMTPHM FMMKESDKFF RLQKLLDELD DKTAIVFVNR MKIRETSRIP IVGDSDSNES QITWCMNKQE AIELLSCEAD NMVGTEAVRQ ILYHIIGERV
501: EYKKLVSGLK LGLEDPYRLA HKENESLRTV WRNVGLDTAA SYFVRYVITV NVLREQNTKV ETFKLGKVSA KKWKRSRSKM EERNLHAGYL TTPASKKQIV
601: KNDDPEEKED FMETDLEKPE DSTKTAEKPL AESKKEKAQK GSAKTAAKKR LDQSVHSYTK KKNSEGGSMD MHIAESSKSK KNNSRAMTLS TKESEQTLKS
701: HPKWKQTAVK EVESNKSENG EELDGKRVNI RWPLDKKFYD GVIKSNNILN EMHLASYSDV DFEEHKKERW EIISDEEVSK ISRIHGKFRD VVRSVYSDDQ
801: EHGMEKRKRR TCCLKKRETM VLYSCEVEFM VSMKALGRLK FKEMRGLFDI EDLSKMRFKL KGENVGLSLK EKET
001: MDYERIQKVQ KSIISPTKLR MKLMGPLNNM KREGSKSNSN SSRTSPSRLQ IPDDSEFSKN SLLASNSYSD DDVAATTTDI EVAKLPNEPV LYPTENDNQG
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8G3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.