CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024828.1-P	Field mustard	nucleus	98.2	96.89
CDY03066	Canola	nucleus	84.01	92.56
CDY09386	Canola	nucleus	75.0	83.04
CDY15819	Canola	nucleus	79.73	80.09
AT2G02170.2	Thale cress	nucleus	83.56	76.34
VIT_01s0010g01760.t01	Wine grape	nucleus	65.32	56.86
KRH58560	Soybean	nucleus	64.64	56.61
KRH42459	Soybean	nucleus	64.41	56.08
GSMUA_Achr5P11780_001	Banana	cytosol	40.09	55.11
GSMUA_Achr1P02030_001	Banana	nucleus	55.63	50.41
GSMUA_Achr11P...	Banana	nucleus	54.73	49.49
Solyc01g008180.2.1	Tomato	nucleus	58.11	49.43
TraesCS6D01G053500.1	Wheat	nucleus	53.83	46.95
TraesCS6A01G046400.1	Wheat	nucleus	53.6	46.85
TraesCS6B01G062500.1	Wheat	nucleus	53.38	46.65
Os02t0116800-01	Rice	nucleus	53.15	46.27
HORVU0Hr1G040310.2	Barley	cytosol, mitochondrion, nucleus	53.38	46.11
GSMUA_Achr2P10980_001	Banana	nucleus	43.47	45.84
Os03t0120200-01	Rice	nucleus	41.44	43.5
GSMUA_Achr5P19220_001	Banana	nucleus	40.99	43.03
Zm00001d054034_P001	Maize	nucleus	53.38	43.01
EES06158	Sorghum	nucleus, plastid	54.05	42.11
KXG40319	Sorghum	nucleus	40.09	41.98
TraesCS5A01G517700.1	Wheat	nucleus	39.41	41.47
Zm00001d027403_P001	Maize	nucleus	39.41	41.27
TraesCS4D01G343800.1	Wheat	nucleus	38.96	41.0
TraesCS4B01G349100.1	Wheat	nucleus	38.74	40.57
Zm00001d048481_P001	Maize	cytosol, mitochondrion, nucleus	37.61	39.67
CDY32543	Canola	nucleus	29.5	37.11
CDY12657	Canola	cytosol	29.28	36.83
CDY01823	Canola	nucleus	29.28	36.72
CDX96080	Canola	nucleus	29.05	36.34
CDY09599	Canola	nucleus	37.61	35.08
HORVU4Hr1G085140.6	Barley	nucleus, plastid	37.84	34.78
CDY26269	Canola	nucleus	37.39	34.23
CDX90244	Canola	nucleus	38.29	34.0
CDY12047	Canola	nucleus	38.29	34.0
CDX79905	Canola	nucleus	15.09	24.91
CDY48774	Canola	nucleus	14.86	24.44
CDX72021	Canola	nucleus	14.19	23.16
CDY06095	Canola	nucleus	14.41	21.84
CDY08209	Canola	nucleus	20.5	21.72
CDY68168	Canola	nucleus	20.5	21.72
CDY62472	Canola	nucleus	29.5	14.99
CDY62474	Canola	nucleus	29.5	14.99
CDY36609	Canola	cytosol	21.4	14.77
CDY24070	Canola	extracellular	21.62	13.11

Protein Annotations

EnsemblPlants:CDY17607	EnsemblPlantsGene:GSBRNA2T00001814001	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF1
PFAM:PF03763	ProteinID:CDY17607	ProteinID:CDY17607.1	SEG:seg	UniParc:UPI0004EED97B	UniProt:A0A078FXX9
MapMan:35.2	:	:	:	:	:

Description

BnaA06g34260DBnaA06g34260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXX9]

Coordinates

chrLK032076:+:77396..79389

Molecular Weight (calculated)

49130.1 Da

IEP (calculated)

9.950

GRAVY (calculated)

-0.820

Length

444 amino acids

Sequence
(BLAST)

001: MDYERIGKTQ VTTCGGGGGL SPRKLRSMLL LGADRKKKED MIEPTPIMRS GSNQSDDLVA SGSDDCKDVD VVCEITTDYD NVCEEVKSVS ASLFEFQKDK
101: AAPRLPTRSF SKPAPSKWDD AQKWIASPTS SNRPKTAAGQ VHVSKKGPGF GRQIPLAAEE PDTKRIDVSQ VKKETGQKFV SWEVNLIDNS IATEVNLSRH
201: DSSIATAFAQ PPSTARSVSM RDMGTEMTPI ASQEPSRNGT PIRATTPIRS PITSEPSSPE RRQGASASQM SNKELSEKEL QMKTRREIME LGTQLGKLNI
301: AAWASKEDEV KDASTSLKNK AASLQTSKSV SEARASAWEE AEKAKHMARF RREEMKIQAW ENHQKAKSEA EMRKTEVEVE RIKARAQDRL MNKLAEIERK
401: AEGKRAAAEA KKNRQAAKTE KQAEQIRRTG KVPSLMFSCF SFCS

Best Arabidopsis Sequence Match ( AT2G02170.4 )
(BLAST)

001: MDYERIGKTQ VTSSGGGFSP GKLRSMLLLG VDRKKNEEEE STPTMRSGSN QIDDPRVYVA SGLDDCKDVD VVSEITDCST SGIARSISLG LQEYSDYDNV
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS

Arabidopsis Description

At2g02170/F5O4.6 [Source:UniProtKB/TrEMBL;Acc:Q9ZUM1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.