Factsheet for TraesCS5A01G517700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G343800.1	Wheat	nucleus	97.39	97.39
TraesCS4B01G349100.1	Wheat	nucleus	96.21	95.75
HORVU4Hr1G085140.6	Barley	nucleus, plastid	93.13	81.37
Os03t0120200-01	Rice	nucleus	80.57	80.38
KXG40319	Sorghum	nucleus	78.67	78.3
Zm00001d027403_P001	Maize	nucleus	77.49	77.12
Zm00001d048481_P001	Maize	cytosol, mitochondrion, nucleus	74.17	74.35
GSMUA_Achr5P11780_001	Banana	cytosol	33.89	44.27
GSMUA_Achr1P02030_001	Banana	nucleus	51.18	44.08
GSMUA_Achr11P...	Banana	nucleus	50.71	43.58
VIT_01s0010g01760.t01	Wine grape	nucleus	51.18	42.35
CDY09386	Canola	nucleus	39.57	41.65
Bra026612.1-P	Field mustard	nucleus	40.52	41.2
TraesCS6A01G046400.1	Wheat	nucleus	49.05	40.75
CDY03066	Canola	nucleus	38.63	40.45
CDY15819	Canola	nucleus	41.71	39.82
KRH42459	Soybean	nucleus	48.1	39.8
CDY17607	Canola	nucleus	41.47	39.41
GSMUA_Achr2P10980_001	Banana	nucleus	39.1	39.19
KRH58560	Soybean	nucleus	46.92	39.05
AT2G02170.2	Thale cress	nucleus	44.55	38.68
Bra024828.1-P	Field mustard	nucleus	41.23	38.67
Solyc01g008180.2.1	Tomato	nucleus	44.55	36.02
GSMUA_Achr5P19220_001	Banana	nucleus	36.02	35.93
TraesCS4A01G238400.1	Wheat	nucleus	26.3	31.81
TraesCS5A01G040500.1	Wheat	nucleus	31.28	29.4
TraesCS2A01G464000.1	Wheat	nucleus, plastid	32.23	25.86
TraesCS2A01G199300.1	Wheat	nucleus	17.06	23.15
TraesCS7A01G443500.1	Wheat	nucleus	14.69	21.83
TraesCS5A01G464900.1	Wheat	nucleus	15.4	21.1

Protein Annotations

EnsemblPlants:TraesCS5A01G517700.1	EnsemblPlantsGene:TraesCS5A01G517700	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF18
PFAM:PF03763	SEG:seg	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5A:+:680497919..680501688

Molecular Weight (calculated)

46549.1 Da

IEP (calculated)

7.063

GRAVY (calculated)

-0.900

Length

422 amino acids

Sequence
(BLAST)

001: MDYERIHDPP HRQSGGFSPA KLRAMLLGLE KHQHSGEDTS PEANDSGELD DRRSLECSTS TEMSSNSGHR SRNRAPDDDS FDSESSSSGP TTVKRPTAVS
101: SLLPPFSRPT PSKWDDAEKW ISSPTANRTG RVMSAAGFAP KKTAFALPEH GACPPAAAKV VAEVPRNTGT LTDNSVGSTQ PDSIKPAETA PTVDEPEHVI
201: RSVSMRDMGT EMTPIASQEP SRTGTPIIAS SPTSTRTPTP NRSVEFGVGT IDSGKMGMSE EELQLNTRKE IMDLGERLGK TTIAAWASKE ERATANFPNV
301: PADKAVEIDR ETRAADWQEA EKAKYLARFQ REEVKIQAWE NHQRAKIEAE MKSIEAKMER KRAREHDRFA RKLASARRRA EAKREAAEAR RSQEAERTDE
401: QAAQIRKTGH IPSSISCWCW CL

Best Arabidopsis Sequence Match ( AT2G02170.1 )
(BLAST)

001: MDYERIGKTQ VTSSGGGFSP GKLRSMLLLG VDRKKNEEEE STPTMRSGSN QIDDPRVYVA SGLDDCKDVD VVSEITDCST SGIARSISLG LQEYSDYDNV
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS

Arabidopsis Description

At2g02170/F5O4.6 [Source:UniProtKB/TrEMBL;Acc:Q9ZUM1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.