Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09386 | Canola | nucleus | 87.78 | 96.76 |
| CDY03066 | Canola | nucleus | 74.43 | 81.64 |
| CDY17607 | Canola | nucleus | 80.09 | 79.73 |
| AT2G02170.2 | Thale cress | nucleus | 84.84 | 77.16 |
| VIT_01s0010g01760.t01 | Wine grape | nucleus | 67.42 | 58.43 |
| GSMUA_Achr5P11780_001 | Banana | cytosol | 41.18 | 56.35 |
| KRH58560 | Soybean | nucleus | 64.48 | 56.21 |
| KRH42459 | Soybean | nucleus | 64.71 | 56.08 |
| GSMUA_Achr1P02030_001 | Banana | nucleus | 57.01 | 51.43 |
| GSMUA_Achr11P... | Banana | nucleus | 56.33 | 50.71 |
| Solyc01g008180.2.1 | Tomato | nucleus | 59.73 | 50.57 |
| GSMUA_Achr2P10980_001 | Banana | nucleus | 45.25 | 47.51 |
| Os02t0116800-01 | Rice | nucleus | 54.52 | 47.25 |
| TraesCS6A01G046400.1 | Wheat | nucleus | 54.07 | 47.05 |
| TraesCS6B01G062500.1 | Wheat | nucleus | 53.85 | 46.85 |
| TraesCS6D01G053500.1 | Wheat | nucleus | 53.85 | 46.76 |
| HORVU0Hr1G040310.2 | Barley | cytosol, mitochondrion, nucleus | 53.39 | 45.91 |
| Os03t0120200-01 | Rice | nucleus | 42.53 | 44.44 |
| Zm00001d054034_P001 | Maize | nucleus | 54.75 | 43.92 |
| GSMUA_Achr5P19220_001 | Banana | nucleus | 41.4 | 43.26 |
| KXG40319 | Sorghum | nucleus | 40.95 | 42.69 |
| EES06158 | Sorghum | nucleus, plastid | 54.75 | 42.46 |
| Zm00001d027403_P001 | Maize | nucleus | 40.72 | 42.45 |
| TraesCS5A01G517700.1 | Wheat | nucleus | 39.82 | 41.71 |
| TraesCS4D01G343800.1 | Wheat | nucleus | 39.82 | 41.71 |
| Zm00001d048481_P001 | Maize | cytosol, mitochondrion, nucleus | 39.59 | 41.57 |
| TraesCS4B01G349100.1 | Wheat | nucleus | 39.59 | 41.27 |
| CDY32543 | Canola | nucleus | 29.86 | 37.39 |
| CDY01823 | Canola | nucleus | 29.86 | 37.29 |
| CDY12657 | Canola | cytosol | 29.64 | 37.11 |
| CDX96080 | Canola | nucleus | 29.64 | 36.9 |
| CDY09599 | Canola | nucleus | 38.24 | 35.5 |
| HORVU4Hr1G085140.6 | Barley | nucleus, plastid | 38.69 | 35.4 |
| CDY26269 | Canola | nucleus | 37.78 | 34.43 |
| CDY12047 | Canola | nucleus | 37.78 | 33.4 |
| CDX90244 | Canola | nucleus | 37.56 | 33.2 |
| CDX79905 | Canola | nucleus | 14.48 | 23.79 |
| CDY48774 | Canola | nucleus | 14.25 | 23.33 |
| CDX72021 | Canola | nucleus | 13.8 | 22.43 |
| CDY08209 | Canola | nucleus | 20.81 | 21.96 |
| CDY68168 | Canola | nucleus | 20.81 | 21.96 |
| CDY06095 | Canola | nucleus | 14.03 | 21.16 |
| CDY36609 | Canola | cytosol | 21.95 | 15.09 |
| CDY62474 | Canola | nucleus | 28.28 | 14.3 |
| CDY62472 | Canola | nucleus | 28.28 | 14.3 |
| CDY24070 | Canola | extracellular | 22.17 | 13.39 |
Protein Annotations
| EnsemblPlants:CDY15819 | EnsemblPlantsGene:GSBRNA2T00090147001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF1 |
| PFAM:PF03763 | ProteinID:CDY15819 | ProteinID:CDY15819.1 | SEG:seg | UniParc:UPI0004EDFDED | UniProt:A0A078FSD4 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC02g34380DBnaC02g34380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSD4]
Coordinates
chrLK032058:-:514195..516385
Molecular Weight (calculated)
48886.3 Da
IEP (calculated)
9.730
GRAVY (calculated)
-0.877
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYERIGKTQ VTSGSGGGFS PGKLRTMLLG VDRKNKQEPG SNQIHDLAAG GSDDCKDVNV VTEITDSSTS ATVLGDLHDY DNVNEIKSLS TASLFEFQKT
101: EKEKTTPRMS VRSFSKPAPS KWDDAQKWIA SPTSNRPKTG QVQAHASKKG PSFGRQSSIK IVDEEPDTKR VDVSQVKKET GGHKFVSWEV DSYLKPVLMV
201: ENSATEVNLS RHDSSMATAF AQPPSTARSV SMRDMGTEMT PIASQEPSRN GTPIRATTPI RSPVTSAPSS PGRRALSNEE LSEKEIQMKT RREIMVLGTQ
301: LGKLNIAAWA SKEDEEKDAS TSQTSKSASE ARASAWEEAE KAKHMARFRR EEMKIQAWEN HQKAKSEAEM RKTEVEVERV KGRAQDRLMN KIAEIERKAE
401: EKRAAAEAKK NREAAKTEKQ AEEIRRTGKV PSLLFSCSSF CS
101: EKEKTTPRMS VRSFSKPAPS KWDDAQKWIA SPTSNRPKTG QVQAHASKKG PSFGRQSSIK IVDEEPDTKR VDVSQVKKET GGHKFVSWEV DSYLKPVLMV
201: ENSATEVNLS RHDSSMATAF AQPPSTARSV SMRDMGTEMT PIASQEPSRN GTPIRATTPI RSPVTSAPSS PGRRALSNEE LSEKEIQMKT RREIMVLGTQ
301: LGKLNIAAWA SKEDEEKDAS TSQTSKSASE ARASAWEEAE KAKHMARFRR EEMKIQAWEN HQKAKSEAEM RKTEVEVERV KGRAQDRLMN KIAEIERKAE
401: EKRAAAEAKK NREAAKTEKQ AEEIRRTGKV PSLLFSCSSF CS
001: MDYERIGKTQ VTSSGGGFSP GKLRSMLLLG VDRKKNEEEE STPTMRSGSN QIDDPRVYVA SGLDDCKDVD VVSEITDCST SGIARSISLG LQEYSDYDNV
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
Arabidopsis Description
At2g02170/F5O4.6 [Source:UniProtKB/TrEMBL;Acc:Q9ZUM1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.