Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G517700.1 | Wheat | nucleus | 95.75 | 96.21 |
| TraesCS4D01G343800.1 | Wheat | nucleus | 95.52 | 95.97 |
| HORVU4Hr1G085140.6 | Barley | nucleus, plastid | 91.04 | 79.92 |
| Os03t0120200-01 | Rice | nucleus | 79.48 | 79.67 |
| KXG40319 | Sorghum | nucleus | 77.83 | 77.83 |
| Zm00001d027403_P001 | Maize | nucleus | 77.12 | 77.12 |
| Zm00001d048481_P001 | Maize | cytosol, mitochondrion, nucleus | 74.06 | 74.58 |
| GSMUA_Achr5P11780_001 | Banana | cytosol | 33.73 | 44.27 |
| GSMUA_Achr11P... | Banana | nucleus | 50.94 | 43.99 |
| GSMUA_Achr1P02030_001 | Banana | nucleus | 50.71 | 43.88 |
| VIT_01s0010g01760.t01 | Wine grape | nucleus | 50.94 | 42.35 |
| CDY09386 | Canola | nucleus | 39.15 | 41.4 |
| TraesCS6B01G062500.1 | Wheat | nucleus | 49.53 | 41.34 |
| Bra026612.1-P | Field mustard | nucleus | 40.09 | 40.96 |
| KRH42459 | Soybean | nucleus | 48.11 | 40.0 |
| CDY03066 | Canola | nucleus | 37.74 | 39.7 |
| KRH58560 | Soybean | nucleus | 47.41 | 39.65 |
| CDY15819 | Canola | nucleus | 41.27 | 39.59 |
| GSMUA_Achr2P10980_001 | Banana | nucleus | 38.92 | 39.19 |
| CDY17607 | Canola | nucleus | 40.57 | 38.74 |
| AT2G02170.2 | Thale cress | nucleus | 44.1 | 38.48 |
| Bra024828.1-P | Field mustard | nucleus | 40.57 | 38.22 |
| GSMUA_Achr5P19220_001 | Banana | nucleus | 36.79 | 36.88 |
| Solyc01g008180.2.1 | Tomato | nucleus | 43.87 | 35.63 |
| TraesCS4B01G076500.1 | Wheat | nucleus | 25.94 | 31.07 |
| TraesCS5B01G041700.1 | Wheat | mitochondrion, nucleus | 31.37 | 28.24 |
| TraesCS2B01G485700.1 | Wheat | nucleus, plastid | 32.78 | 26.33 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 16.98 | 23.38 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 14.39 | 21.94 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 15.33 | 21.24 |
| TraesCS2B01G363600.1 | Wheat | plastid | 19.58 | 20.1 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G349100.1 | EnsemblPlantsGene:TraesCS4B01G349100 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF18 |
| PFAM:PF03763 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:642451526..642454943
Molecular Weight (calculated)
46845.7 Da
IEP (calculated)
7.332
GRAVY (calculated)
-0.832
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYERIHDPP HRQSGGFSPA KLRAMLLGLE KHQHSGEDTS PEANDSGELD DRRSLECSTS TEMSSNSGHR SRNRAPDDDS FDSESSSSGP TTVKRPAAVS
101: SLLPPFSRPT PSKWDDAEKW ISSPTANRTG RVMSAAGFAP KKMTFALPEH GACPPAAAKV VAEVPRNTGT LTGNSVGSTQ PVLLKPAETA PIVEEPEHVI
201: RSVSMRDMGT EMTPIASQEP SRTGTPIIAS SPTSTRTPTP NRSVEFGVGT IDSSKMGMSE EELQLNTRKE IMDLGERLGK TTIAAWASKE ERATANFANV
301: PADKALEIDR ETRAADWQEA EKAKYLARFQ REEVKIQAWE NHQRAKIEAE MKSIEAKMER KRAHEHDRLA RKLASARRRA EAKREAAEAR RSQEAERTDE
401: QAAQIRKTGH IPSSFSCWCW CWCL
101: SLLPPFSRPT PSKWDDAEKW ISSPTANRTG RVMSAAGFAP KKMTFALPEH GACPPAAAKV VAEVPRNTGT LTGNSVGSTQ PVLLKPAETA PIVEEPEHVI
201: RSVSMRDMGT EMTPIASQEP SRTGTPIIAS SPTSTRTPTP NRSVEFGVGT IDSSKMGMSE EELQLNTRKE IMDLGERLGK TTIAAWASKE ERATANFANV
301: PADKALEIDR ETRAADWQEA EKAKYLARFQ REEVKIQAWE NHQRAKIEAE MKSIEAKMER KRAHEHDRLA RKLASARRRA EAKREAAEAR RSQEAERTDE
401: QAAQIRKTGH IPSSFSCWCW CWCL
001: MDYERIGKTQ VTSSGGGFSP GKLRSMLLLG VDRKKNEEEE STPTMRSGSN QIDDPRVYVA SGLDDCKDVD VVSEITDCST SGIARSISLG LQEYSDYDNV
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
Arabidopsis Description
At2g02170/F5O4.6 [Source:UniProtKB/TrEMBL;Acc:Q9ZUM1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.