Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G432700.1 | Wheat | nucleus | 94.6 | 94.95 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 93.53 | 91.55 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 91.37 | 91.37 |
| Solyc10g080240.1.1 | Tomato | cytosol | 11.87 | 66.0 |
| Os07t0208600-01 | Rice | nucleus | 57.55 | 61.07 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 44.96 | 45.96 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 43.88 | 45.02 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 43.53 | 44.65 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 48.56 | 44.12 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 43.88 | 43.57 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 47.84 | 43.18 |
| CDY48774 | Canola | nucleus | 40.65 | 41.85 |
| Bra004657.1-P | Field mustard | cytosol | 40.65 | 41.85 |
| CDX79905 | Canola | nucleus | 40.29 | 41.64 |
| AT2G41870.1 | Thale cress | nucleus | 40.65 | 41.24 |
| KRG95278 | Soybean | nucleus | 39.93 | 40.96 |
| Solyc04g015520.2.1 | Tomato | nucleus | 44.24 | 40.59 |
| KRH71974 | Soybean | nucleus | 43.17 | 40.13 |
| KRH33097 | Soybean | nucleus | 42.45 | 39.86 |
| CDX72021 | Canola | nucleus | 38.49 | 39.34 |
| PGSC0003DMT400070037 | Potato | nucleus | 44.6 | 39.12 |
| Bra007335.1-P | Field mustard | nucleus | 41.01 | 38.91 |
| CDY06095 | Canola | nucleus | 40.29 | 38.23 |
| AT3G57540.1 | Thale cress | nucleus | 40.65 | 38.18 |
| PGSC0003DMT400060978 | Potato | nucleus | 39.93 | 37.88 |
| Solyc10g080230.1.1 | Tomato | cytosol | 20.5 | 36.08 |
| KRH66963 | Soybean | nucleus | 24.46 | 30.22 |
| TraesCS4B01G076500.1 | Wheat | nucleus | 24.46 | 19.21 |
| TraesCS4B01G349100.1 | Wheat | nucleus | 21.94 | 14.39 |
| TraesCS6B01G062500.1 | Wheat | nucleus | 23.74 | 12.99 |
| TraesCS2B01G363600.1 | Wheat | plastid | 17.99 | 12.11 |
| TraesCS5B01G041700.1 | Wheat | mitochondrion, nucleus | 17.99 | 10.62 |
| TraesCS2B01G485700.1 | Wheat | nucleus, plastid | 19.06 | 10.04 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G342300.1 | EnsemblPlantsGene:TraesCS7B01G342300 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF11 |
| PFAM:PF03763 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7B:-:597310866..597311798
Molecular Weight (calculated)
29976.7 Da
IEP (calculated)
4.830
GRAVY (calculated)
-0.661
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSDPIDHM SVSERLQRLA TPSAPAEDDV DVDADGDSTT YRDIHPSPAP APLRQPSWDV ASQRSLSSYS DEQFMSSSMG REFMAMADAG GAPADPCPGD
101: SGAGNNDLQL ARIGEHEPVP ETETNPLAIV ADTGGALPPA PTSSSSCAPA AEVVEVRQVK KEEAEAKVAA WQAEEVAKIN NKFKREEVVI NGWENQQIHT
201: AATYLSKIER KLEEERAKAT EKAQNEVARA RRKAEEKRAS AEAARGTKTA RVMDLANFMK AVGRVPTKRS FFSFSSSS
101: SGAGNNDLQL ARIGEHEPVP ETETNPLAIV ADTGGALPPA PTSSSSCAPA AEVVEVRQVK KEEAEAKVAA WQAEEVAKIN NKFKREEVVI NGWENQQIHT
201: AATYLSKIER KLEEERAKAT EKAQNEVARA RRKAEEKRAS AEAARGTKTA RVMDLANFMK AVGRVPTKRS FFSFSSSS
001: MLTLYHQERS PDATSNDRDE TPETVVREVH ALTPAPEDNS RTMTATLPPP PAFRGYFSPP RSATTMSEGE NFTTISREFN ALVIAGSSME NNELMTRDVT
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
Arabidopsis Description
Putative DNA binding protein [Source:UniProtKB/TrEMBL;Acc:P93758]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.