Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g116320.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | Solyc03g116320.2.1 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400070037 | Potato | nucleus | 96.04 | 91.8 |
| Solyc10g080240.1.1 | Tomato | cytosol | 14.19 | 86.0 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 59.08 | 66.05 |
| KRG95278 | Soybean | nucleus | 54.46 | 60.89 |
| KRH33097 | Soybean | nucleus | 55.78 | 57.09 |
| KRH71974 | Soybean | nucleus | 55.78 | 56.52 |
| Solyc10g080230.1.1 | Tomato | cytosol | 29.37 | 56.33 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 50.16 | 56.09 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 49.84 | 53.93 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 47.85 | 53.31 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 43.56 | 51.97 |
| CDX79905 | Canola | nucleus | 45.54 | 51.3 |
| Zm00001d034558_P001 | Maize | nucleus | 43.56 | 50.77 |
| CDY48774 | Canola | nucleus | 45.21 | 50.74 |
| Bra004657.1-P | Field mustard | cytosol | 45.21 | 50.74 |
| Zm00001d006626_P001 | Maize | nucleus | 43.56 | 50.57 |
| AT2G41870.1 | Thale cress | nucleus | 45.54 | 50.37 |
| Os03t0808300-01 | Rice | plasma membrane | 45.54 | 48.59 |
| KRH66963 | Soybean | nucleus | 35.97 | 48.44 |
| CDX72021 | Canola | nucleus | 43.23 | 48.16 |
| Zm00001d021839_P001 | Maize | nucleus | 46.53 | 47.96 |
| Os07t0569100-01 | Rice | plasma membrane | 49.17 | 47.15 |
| Bra007335.1-P | Field mustard | nucleus | 45.54 | 47.1 |
| Os07t0208600-01 | Rice | nucleus | 40.26 | 46.56 |
| CDY06095 | Canola | nucleus | 44.88 | 46.42 |
| EER99573 | Sorghum | nucleus | 47.19 | 45.69 |
| OQU90788 | Sorghum | nucleus | 43.89 | 45.55 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 41.58 | 45.32 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 45.87 | 45.13 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 46.2 | 45.02 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 45.87 | 44.98 |
| AT3G57540.1 | Thale cress | nucleus | 43.89 | 44.93 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 40.92 | 44.77 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 40.59 | 44.24 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 40.92 | 43.66 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 43.56 | 43.28 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 43.89 | 43.18 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 43.56 | 43.14 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 40.59 | 39.68 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 44.22 | 39.65 |
| Solyc05g014710.2.1 | Tomato | nucleus | 19.14 | 16.57 |
| Solyc01g008180.2.1 | Tomato | nucleus | 20.46 | 11.88 |
| Solyc08g045640.2.1 | Tomato | mitochondrion | 16.17 | 9.92 |
| Solyc03g123590.2.1 | Tomato | nucleus | 14.85 | 9.66 |
Protein Annotations
| EnsemblPlants:Solyc04g015520.2.1 | EnsemblPlantsGene:Solyc04g015520.2 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF7 |
| PFAM:PF03763 | SEG:seg | UniParc:UPI0002766BC5 | UniProt:K4BQ54 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr4:+:5728590..5731134
Molecular Weight (calculated)
34181.4 Da
IEP (calculated)
7.084
GRAVY (calculated)
-1.074
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNDQRALVL SSNNNNRDNN HEDQDQNQNL RDDDIRDIHA MTPPQPPVPP IMTNINRGRR REAWETSSHR SSSLSSELGG VPSENFTTMS REFNALVLAG
101: SSTNNNNNDN NNNNNDTSHE VEGTINNNLG RIFEEETIVE ENNSLAIVAD NTNNNNYNNN NNVYLNPSTP SPNNNLSGIS QQGEVIVHRV KKEEVESKIS
201: AWQTAKIAKI NNRFKCEDAV INGWENEEVQ KATSWMKKVE RKLEEKRAKA LEKMQNDIAN ARRKAEERKA SAEAKRGTKV ARVVELANLM RAVGRAPTKR
301: SFF
101: SSTNNNNNDN NNNNNDTSHE VEGTINNNLG RIFEEETIVE ENNSLAIVAD NTNNNNYNNN NNVYLNPSTP SPNNNLSGIS QQGEVIVHRV KKEEVESKIS
201: AWQTAKIAKI NNRFKCEDAV INGWENEEVQ KATSWMKKVE RKLEEKRAKA LEKMQNDIAN ARRKAEERKA SAEAKRGTKV ARVVELANLM RAVGRAPTKR
301: SFF
001: MLTLYHQERS PDATSNDRDE TPETVVREVH ALTPAPEDNS RTMTATLPPP PAFRGYFSPP RSATTMSEGE NFTTISREFN ALVIAGSSME NNELMTRDVT
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
Arabidopsis Description
Putative DNA binding protein [Source:UniProtKB/TrEMBL;Acc:P93758]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.