Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | KRH03466 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | KRH54542 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | KRH56919 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | KRH63357 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG95278 | Soybean | nucleus | 85.78 | 71.22 |
| Solyc10g080230.1.1 | Tomato | cytosol | 36.89 | 52.53 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 52.44 | 43.54 |
| KRH33097 | Soybean | nucleus | 56.89 | 43.24 |
| KRH71974 | Soybean | nucleus | 56.44 | 42.47 |
| PGSC0003DMT400060978 | Potato | nucleus | 50.67 | 38.91 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 44.0 | 36.53 |
| Solyc04g015520.2.1 | Tomato | nucleus | 48.44 | 35.97 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 41.78 | 34.56 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 42.67 | 34.29 |
| PGSC0003DMT400070037 | Potato | nucleus | 48.0 | 34.07 |
| CDX79905 | Canola | nucleus | 39.56 | 33.09 |
| Bra004657.1-P | Field mustard | cytosol | 39.11 | 32.59 |
| CDY48774 | Canola | nucleus | 38.67 | 32.22 |
| AT2G41870.1 | Thale cress | nucleus | 39.11 | 32.12 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 36.0 | 31.89 |
| Zm00001d006626_P001 | Maize | nucleus | 36.89 | 31.8 |
| CDX72021 | Canola | nucleus | 37.78 | 31.25 |
| Zm00001d034558_P001 | Maize | nucleus | 36.0 | 31.15 |
| CDY06095 | Canola | nucleus | 40.0 | 30.72 |
| AT3G57540.1 | Thale cress | nucleus | 40.0 | 30.41 |
| Bra007335.1-P | Field mustard | nucleus | 39.56 | 30.38 |
| Zm00001d021839_P001 | Maize | nucleus | 39.56 | 30.27 |
| Os03t0808300-01 | Rice | plasma membrane | 37.78 | 29.93 |
| EER99573 | Sorghum | nucleus | 40.44 | 29.07 |
| OQU90788 | Sorghum | nucleus | 37.33 | 28.77 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 39.56 | 28.62 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 39.11 | 28.57 |
| Os07t0569100-01 | Rice | plasma membrane | 40.0 | 28.48 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 39.11 | 28.48 |
| Os07t0208600-01 | Rice | nucleus | 32.89 | 28.24 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 37.33 | 27.54 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 37.78 | 27.42 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 37.33 | 27.27 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 36.89 | 27.12 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 37.78 | 25.15 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 30.67 | 24.91 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 30.67 | 24.82 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 31.11 | 24.65 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 30.22 | 24.46 |
| KRH42640 | Soybean | nucleus | 15.11 | 9.26 |
| KRH58742 | Soybean | nucleus | 15.11 | 9.26 |
| KRH42459 | Soybean | nucleus | 19.56 | 8.63 |
| KRH47718 | Soybean | nucleus | 17.78 | 8.53 |
| KRH58560 | Soybean | nucleus | 19.11 | 8.48 |
| KRH06283 | Soybean | cytosol | 17.78 | 8.46 |
| KRH42599 | Soybean | nucleus | 19.11 | 7.96 |
| KRH58701 | Soybean | nucleus | 19.11 | 7.96 |
| KRH44798 | Soybean | nucleus | 19.11 | 7.8 |
Protein Annotations
| EMBL:ACUP02002022 | EnsemblPlants:KRH66963 | EnsemblPlantsGene:GLYMA_03G138100 | EntrezGene:100819435 | InterPro:Remorin_C | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF7 | PFAM:PF03763 | ProteinID:KRH66963 | ProteinID:KRH66963.1 | SEG:seg | UniParc:UPI0002956C59 |
| UniProt:K7KEX2 | MapMan:35.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:35455791..35458710
Molecular Weight (calculated)
25038.8 Da
IEP (calculated)
5.554
GRAVY (calculated)
-0.859
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNEYPTIIA STTHGSLEEQ EDEHITEIRE IHELTPPPPR GRAWETVHHT HRSSSLSVAS EGGASSSDNF SMSREFSALV LAGSCIDHDN NNISPMNENN
101: HNNNSNSNSL LGRIREEDLM EETNPLAIVP DNHPLQDPVP SSTSQGVRGG GGGAREEHVS VQMVKKEEVD AKISAWQNAK INNRFKREDA VINGWESEQV
201: QKASSWMKKV EKLKYFSSLN RSRLA
101: HNNNSNSNSL LGRIREEDLM EETNPLAIVP DNHPLQDPVP SSTSQGVRGG GGGAREEHVS VQMVKKEEVD AKISAWQNAK INNRFKREDA VINGWESEQV
201: QKASSWMKKV EKLKYFSSLN RSRLA
001: MLTLYHQERS PDATSNDRDE TPETVVREVH ALTPAPEDNS RTMTATLPPP PAFRGYFSPP RSATTMSEGE NFTTISREFN ALVIAGSSME NNELMTRDVT
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
Arabidopsis Description
Putative DNA binding protein [Source:UniProtKB/TrEMBL;Acc:P93758]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.