CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42640	Soybean	nucleus	92.37	92.37
VIT_01s0010g02560.t01	Wine grape	nucleus	59.95	61.28
PGSC0003DMT400044982	Potato	nucleus	58.04	61.21
Solyc05g014710.2.1	Tomato	nucleus	58.31	61.14
AT1G67590.1	Thale cress	nucleus	53.95	57.06
CDY12657	Canola	cytosol	53.68	55.81
Bra033989.1-P	Field mustard	cytosol	53.68	55.49
GSMUA_Achr9P07790_001	Banana	nucleus	47.41	55.41
CDY01823	Canola	nucleus	53.41	55.37
CDX96080	Canola	nucleus	53.13	54.93
CDY32543	Canola	nucleus	52.59	54.67
Bra004237.1-P	Field mustard	nucleus	44.41	51.26
GSMUA_Achr3P17060_001	Banana	nucleus	47.41	50.43
TraesCS4A01G238400.1	Wheat	nucleus	45.5	47.85
HORVU4Hr1G012760.3	Barley	nucleus	45.5	47.58
TraesCS4D01G075000.1	Wheat	nucleus	45.5	47.31
TraesCS4B01G076500.1	Wheat	nucleus	45.23	46.89
Zm00001d050790_P003	Maize	nucleus	40.33	43.66
OQU85140	Sorghum	cytosol	41.14	42.06
Zm00001d051005_P001	Maize	mitochondrion, nucleus	33.52	39.55
EES05380	Sorghum	mitochondrion	32.43	35.74
Os02t0602000-01	Rice	mitochondrion	27.25	29.41
KRH58560	Soybean	nucleus	34.88	25.25
KRH42459	Soybean	nucleus	34.88	25.1
KRH58701	Soybean	nucleus	31.06	21.11
KRH42599	Soybean	nucleus	30.79	20.93
KRG95278	Soybean	nucleus	15.26	20.66
KRH44798	Soybean	nucleus	30.52	20.33
KRH33097	Soybean	nucleus	15.53	19.26
KRH71974	Soybean	nucleus	15.53	19.06
KRH06283	Soybean	cytosol	22.07	17.12
KRH47718	Soybean	nucleus	21.53	16.84
KRH66963	Soybean	nucleus	9.26	15.11

Protein Annotations

EMBL:ACUP02003288	EnsemblPlants:KRH58742	EnsemblPlantsGene:GLYMA_05G145700	EntrezGene:100500158	InterPro:Remorin_C	ncoils:Coil
PANTHER:PTHR31471	PANTHER:PTHR31471:SF15	PFAM:PF03763	ProteinID:KRH58741.1	ProteinID:KRH58742	ProteinID:KRH58742.1
ProteinID:KRH58743.1	SEG:seg	UniParc:UPI00023C4C36	UniProt:I1K3J9	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr5:+:33946467..33950853

Molecular Weight (calculated)

41446.4 Da

IEP (calculated)

9.358

GRAVY (calculated)

-1.080

Length

367 amino acids

Sequence
(BLAST)

001: MRYVEDKGCY NNNGPTQETP NSSAMYSEFH KGKDATRVSN HHHRATMGKP TPSKWDDAQK WLVGLSKGGE KSHSKSKPRN SNADDLRLIA PVPQKEHDYS
101: SSEKEEEEND ACHDFMTNII SANAIAAQYE AEAKRVECDE SNWGSNNNNN DNRFSGNTIQ VQPICFRDMG TEMTPITSQE PSRTGTPIRA TTPATRSPIH
201: SGTSTPMRGQ NGLQQVAEGG HGTTRKCGDQ GSTSPCKKTH EDHQARKLSP LESRAMAWDE AERAKFMARF KREEVKIQAW ENHQIRKAEM EMKKMEVKAE
301: RMKALAQERF ANKLASTKRI AEEKRANAQV KLNDKALRTT ERVEYIRRTG HVPSSFSFSF KLPSICW

Best Arabidopsis Sequence Match ( AT1G67590.1 )
(BLAST)

001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ

Arabidopsis Description

F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.