CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050790_P003	Maize	nucleus	80.78	85.55
TraesCS4D01G075000.1	Wheat	nucleus	66.57	67.71
TraesCS4B01G076500.1	Wheat	nucleus	66.57	67.51
HORVU4Hr1G012760.3	Barley	nucleus	65.74	67.24
TraesCS4A01G238400.1	Wheat	nucleus	64.9	66.76
GSMUA_Achr9P07790_001	Banana	nucleus	52.37	59.87
GSMUA_Achr3P17060_001	Banana	nucleus	54.32	56.52
AT1G67590.1	Thale cress	nucleus	47.08	48.7
CDY01823	Canola	nucleus	47.35	48.02
Bra033989.1-P	Field mustard	cytosol	47.08	47.61
CDX96080	Canola	nucleus	47.08	47.61
CDY12657	Canola	cytosol	46.8	47.59
CDY32543	Canola	nucleus	46.8	47.59
VIT_01s0010g02560.t01	Wine grape	nucleus	47.35	47.35
Solyc05g014710.2.1	Tomato	nucleus	44.57	45.71
PGSC0003DMT400044982	Potato	nucleus	44.01	45.4
Bra004237.1-P	Field mustard	nucleus	39.83	44.97
KRH58742	Soybean	nucleus	42.06	41.14
KRH42640	Soybean	nucleus	41.78	40.87
EES05380	Sorghum	mitochondrion	36.49	39.34
KXG40319	Sorghum	nucleus	29.53	25.0
OQU90788	Sorghum	nucleus	18.38	22.6
EER99573	Sorghum	nucleus	19.5	22.36
EES06158	Sorghum	nucleus, plastid	32.31	20.35
KXG23993	Sorghum	nucleus	23.96	18.7
EES11442	Sorghum	nucleus, plastid	27.3	18.39
EES10116	Sorghum	nucleus, plastid	23.4	16.44

Protein Annotations

EnsemblPlants:OQU85140	EnsemblPlantsGene:SORBI_3004G180400	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF15
PFAM:PF03763	ProteinID:OQU85140	ProteinID:OQU85140.1	SEG:seg	UniParc:UPI000B8B9826	UniProt:A0A1Z5RN18
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:53285724..53287068

Molecular Weight (calculated)

38896.8 Da

IEP (calculated)

10.276

GRAVY (calculated)

-0.827

Length

359 amino acids

Sequence
(BLAST)

001: MLPLDYTTTS WPPHRKNQAL SRPKAMPSKW DDAQKWLVGM SNGGGRADGG THGGGGARVK PRNSNADDRR LLGSSSQNGR VSCSSVDGAL EYNSMVVAAP
101: APSTPPRQTG GEGDDDDVEE TKKIDCMVQQ QHGHGHGHGS PHKAVVMRSV CLRDMGTEMT PIASKEPSRT ATPLRASTPV ARSPISSRSS TPARRRQEGP
201: VGVTTAAIVG TTTEQVAAAG EVGCVGEERT VVGHGHAPSV NSLESRAAAW DEAERAKFMA RYKREEVKIQ AWENHEKRKA ETKMKKMQMK ADQMKSRAQE
301: KLSSRLATTH RMAEEKRASA EAKLNERAAR TSEKANYIRR TGHLPSSFKI SCLCGSSFE

Best Arabidopsis Sequence Match ( AT1G67590.1 )
(BLAST)

001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ

Arabidopsis Description

F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.