Factsheet for HORVU4Hr1G012760.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G075000.1	Wheat	nucleus	96.3	95.75
TraesCS4B01G076500.1	Wheat	nucleus	94.02	93.22
TraesCS4A01G238400.1	Wheat	nucleus	92.31	92.84
Zm00001d050790_P003	Maize	nucleus	64.67	66.96
OQU85140	Sorghum	cytosol	67.24	65.74
GSMUA_Achr9P07790_001	Banana	nucleus	54.13	60.51
GSMUA_Achr3P17060_001	Banana	nucleus	54.99	55.94
AT1G67590.1	Thale cress	nucleus	52.14	52.74
CDY12657	Canola	cytosol	52.71	52.41
CDY32543	Canola	nucleus	52.42	52.12
Bra033989.1-P	Field mustard	cytosol	52.71	52.11
CDY01823	Canola	nucleus	51.85	51.41
CDX96080	Canola	nucleus	51.57	50.99
VIT_01s0010g02560.t01	Wine grape	nucleus	52.14	50.97
PGSC0003DMT400044982	Potato	nucleus	49.29	49.71
Solyc05g014710.2.1	Tomato	nucleus	49.29	49.43
Bra004237.1-P	Field mustard	nucleus	43.02	47.48
KRH58742	Soybean	nucleus	47.58	45.5
KRH42640	Soybean	nucleus	47.01	44.96
HORVU2Hr1G039030.1	Barley	cytosol, nucleus	19.37	26.77
HORVU7Hr1G100790.1	Barley	nucleus	19.37	24.46
HORVU0Hr1G040310.2	Barley	cytosol, mitochondrion, nucleus	34.47	23.54
HORVU4Hr1G085140.6	Barley	nucleus, plastid	30.2	21.95
HORVU5Hr1G111120.3	Barley	cytosol	18.52	20.97
HORVU5Hr1G111130.2	Barley	cytosol, nucleus	19.66	20.41
HORVU2Hr1G103570.7	Barley	nucleus, plastid	30.48	20.19
HORVU2Hr1G084090.2	Barley	plastid	23.08	19.38
HORVU5Hr1G009780.6	Barley	cytosol	25.07	18.18

Protein Annotations

EnsemblPlants:HORVU4Hr1G012760.3	EnsemblPlantsGene:HORVU4Hr1G012760	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF15	PFAM:PF03763	SEG:seg
UniParc:UPI00029555D9	UniProt:M0VNG3	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:43053612..43056366

Molecular Weight (calculated)

37872.5 Da

IEP (calculated)

10.087

GRAVY (calculated)

-0.850

Length

351 amino acids

Sequence
(BLAST)

001: MQATARQVED KECYSYTTNG AGNGRPQRKN PAASSRLKPM PSKWEDAQKW LVGMSNGGGD GMHGGGGKAS KPRNSNADDR RLLSSSSQNG RISCSSVDGG
101: IEYNMVAAPP TPPQLGEDDV GETKNMDCMV RPHGSPVSVC LRDMGTEMTP IASKEPSRAA TPLRSTTPVA RSPIPSRSST PGRRRQQDAP PAGVVGSDVV
201: RTAEQAAVSN NAVGAREADR DSDGGAVGGA PRANTLESRA AAWDEAERAK FMARYKREEV KIQAWENHEK RKAEMEMKKI EMKAEQMKAR AQEKLANKLA
301: TARRVAEEKR AVAEATLNEG AARTSEKADY IRRTGHLPSS FFSFRIPSLC G

Best Arabidopsis Sequence Match ( AT1G67590.1 )
(BLAST)

001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ

Arabidopsis Description

F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.