Factsheet for PGSC0003DMT400044982

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014710.2.1	Tomato	nucleus	98.28	97.71
VIT_01s0010g02560.t01	Wine grape	nucleus	68.39	66.3
AT1G67590.1	Thale cress	nucleus	58.33	58.5
KRH58742	Soybean	nucleus	61.21	58.04
KRH42640	Soybean	nucleus	61.21	58.04
CDY12657	Canola	cytosol	58.33	57.51
Bra033989.1-P	Field mustard	cytosol	58.33	57.18
CDY01823	Canola	nucleus	57.76	56.78
CDY32543	Canola	nucleus	57.47	56.66
CDX96080	Canola	nucleus	57.76	56.62
GSMUA_Achr9P07790_001	Banana	nucleus	50.29	55.73
Bra004237.1-P	Field mustard	nucleus	47.99	52.52
GSMUA_Achr3P17060_001	Banana	nucleus	50.57	51.01
TraesCS4A01G238400.1	Wheat	nucleus	49.71	49.57
HORVU4Hr1G012760.3	Barley	nucleus	49.71	49.29
TraesCS4D01G075000.1	Wheat	nucleus	49.71	49.01
TraesCS4B01G076500.1	Wheat	nucleus	49.71	48.87
Zm00001d050790_P003	Maize	nucleus	44.83	46.02
OQU85140	Sorghum	cytosol	45.4	44.01
Zm00001d051005_P001	Maize	mitochondrion, nucleus	33.91	37.94
EES05380	Sorghum	mitochondrion	33.91	35.44
Os02t0602000-01	Rice	mitochondrion	30.46	31.18
PGSC0003DMT400023636	Potato	nucleus	18.1	26.92
PGSC0003DMT400031464	Potato	nucleus	38.22	25.63
PGSC0003DMT400060978	Potato	nucleus	17.53	20.82
PGSC0003DMT400070037	Potato	nucleus	16.67	18.3

Protein Annotations

EnsemblPlants:PGSC0003DMT400044982	EnsemblPlantsGene:PGSC0003DMG400017445	EntrezGene:102585111	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF15	PFAM:PF03763
PGSC:PGSC0003DMG400017445	RefSeq:XP_006341744.1	SEG:seg	UniParc:UPI000296D4D2	UniProt:M1BGX5	MapMan:35.2

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017445]

Coordinates

chr5:+:12207841..12210127

Molecular Weight (calculated)

39240.0 Da

IEP (calculated)

9.618

GRAVY (calculated)

-0.990

Length

348 amino acids

Sequence
(BLAST)

001: MRSIEDKGCL NYGQKQQEVV GGSSMNFEFH GTNRASTHHR TAALGKPTPS KWDDAQKWLV NLSRGEKHQS KATPRNSNAD DLRLIAPVPK KEEYSSDDEG
101: DSSMIQFEVE TKKVDCDESI WRVNRNNSAS VVRSICVRDM GTEMTPIASQ EPSRTATPIR ATTPAVRSPI SSGSSTPIRG QNGTIENGQI VANIGQNRGN
201: AGTTRIVRDV EETVDNELAA KKETDHPNKV NPLETRAMAW DEAERAKYMA RYKREEVKIQ AWENHEKRKA EMEMKRMEVK AERIKARAEE KYKNKLAASR
301: RIAEEKRGNA EAELNEKAVK TSEKADYIRR TGHLPSSFSF KLPSSFCW

Best Arabidopsis Sequence Match ( AT1G67590.1 )
(BLAST)

001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ

Arabidopsis Description

F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.