CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051005_P001	Maize	mitochondrion, nucleus	80.18	85.85
Os02t0602000-01	Rice	mitochondrion	51.95	50.88
GSMUA_Achr9P07790_001	Banana	nucleus	39.04	41.4
GSMUA_Achr3P17060_001	Banana	nucleus	39.34	37.97
OQU85140	Sorghum	cytosol	39.34	36.49
AT1G67590.1	Thale cress	nucleus	37.24	35.73
CDY32543	Canola	nucleus	37.84	35.69
CDY12657	Canola	cytosol	37.54	35.41
CDY01823	Canola	nucleus	37.54	35.31
Bra033989.1-P	Field mustard	cytosol	37.54	35.21
CDX96080	Canola	nucleus	37.24	34.93
VIT_01s0010g02560.t01	Wine grape	nucleus	36.94	34.26
PGSC0003DMT400044982	Potato	nucleus	35.44	33.91
Solyc05g014710.2.1	Tomato	nucleus	35.44	33.71
KRH58742	Soybean	nucleus	35.74	32.43
Bra004237.1-P	Field mustard	nucleus	30.03	31.45
KRH42640	Soybean	nucleus	34.23	31.06
OQU90788	Sorghum	nucleus	19.22	21.92
EER99573	Sorghum	nucleus	20.12	21.41
KXG40319	Sorghum	nucleus	27.03	21.23
EES11442	Sorghum	nucleus, plastid	29.43	18.39
EES06158	Sorghum	nucleus, plastid	30.93	18.07
KXG23993	Sorghum	nucleus	24.32	17.61
EES10116	Sorghum	nucleus, plastid	23.72	15.46

Protein Annotations

EnsemblPlants:EES05380	EnsemblPlantsGene:SORBI_3004G205700	EntrezGene:8056491	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF16	PFAM:PF03763	ProteinID:EES05380	ProteinID:EES05380.1	RefSeq:XP_002452404.1	SEG:seg
UniParc:UPI0001A85259	UniProt:C5XX57	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:55679235..55681934

Molecular Weight (calculated)

36211.6 Da

IEP (calculated)

10.893

GRAVY (calculated)

-0.872

Length

333 amino acids

Sequence
(BLAST)

001: MRRSSQGMMS LSYDAGSGRG LLACYVKPAK PRPSKWDDAQ RWLVSSSRAN DDDRRRSSCA DDRLLLPSAS QKGRHSWSAT DGAALPAALR LAARDDDGDA
101: EAEAEAEAES ETKRVDSVLA YGQPPRCLSL RDIGTEMTPV GSKEPSRANT PRATLPAPAP STPGRAIRAP RRRPDSSKHG GSPPGLAAAD RGAGFECADA
201: QERKESTPGA RTTPVVSPAA AWDAAERAKH MARYRREEMK IQVWENRRRQ KAELQMKTTE AKAERMKRRA QEKTASKLAS AQAAAREKRA QAEAKLSRRA
301: ARVGDRADVL RRTGHLPSSS SSVFSLKLPL MCS

Best Arabidopsis Sequence Match ( AT1G67590.1 )
(BLAST)

001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ

Arabidopsis Description

F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.