Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P07790_001 | Banana | nucleus | 70.14 | 77.07 |
| TraesCS4A01G238400.1 | Wheat | nucleus | 56.23 | 55.59 |
| TraesCS4D01G075000.1 | Wheat | nucleus | 56.52 | 55.24 |
| HORVU4Hr1G012760.3 | Barley | nucleus | 55.94 | 54.99 |
| Zm00001d050790_P003 | Maize | nucleus | 53.91 | 54.87 |
| TraesCS4B01G076500.1 | Wheat | nucleus | 56.23 | 54.8 |
| OQU85140 | Sorghum | cytosol | 56.52 | 54.32 |
| VIT_01s0010g02560.t01 | Wine grape | nucleus | 55.94 | 53.76 |
| CDY01823 | Canola | nucleus | 52.46 | 51.13 |
| CDY12657 | Canola | cytosol | 51.88 | 50.71 |
| CDX96080 | Canola | nucleus | 52.17 | 50.7 |
| PGSC0003DMT400044982 | Potato | nucleus | 51.01 | 50.57 |
| Bra033989.1-P | Field mustard | cytosol | 51.88 | 50.42 |
| Solyc05g014710.2.1 | Tomato | nucleus | 50.72 | 50.0 |
| CDY32543 | Canola | nucleus | 51.01 | 49.86 |
| AT1G67590.1 | Thale cress | nucleus | 50.14 | 49.86 |
| Bra004237.1-P | Field mustard | nucleus | 43.77 | 47.48 |
| KRH58742 | Soybean | nucleus | 50.43 | 47.41 |
| KRH42640 | Soybean | nucleus | 50.43 | 47.41 |
| Zm00001d051005_P001 | Maize | mitochondrion, nucleus | 38.84 | 43.09 |
| EES05380 | Sorghum | mitochondrion | 37.97 | 39.34 |
| GSMUA_Achr5P11780_001 | Banana | cytosol | 32.17 | 34.37 |
| Os02t0602000-01 | Rice | mitochondrion | 31.3 | 31.76 |
| GSMUA_Achr2P10980_001 | Banana | nucleus | 33.62 | 27.55 |
| GSMUA_Achr1P02030_001 | Banana | nucleus | 36.81 | 25.92 |
| GSMUA_Achr11P... | Banana | nucleus | 36.81 | 25.87 |
| GSMUA_Achr5P19220_001 | Banana | nucleus | 28.7 | 23.4 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 17.97 | 22.79 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 17.68 | 22.51 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 17.68 | 21.79 |
| GSMUA_Achr5P26590_001 | Banana | nucleus | 30.72 | 20.83 |
| GSMUA_Achr10P... | Banana | nucleus | 24.35 | 18.67 |
| GSMUA_Achr10P... | Banana | nucleus | 28.99 | 18.45 |
| GSMUA_Achr2P07310_001 | Banana | nucleus | 25.51 | 17.67 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P17060_001 | EnsemblPlants:GSMUA_Achr3T17060_001 | EnsemblPlantsGene:GSMUA_Achr3G17060_001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF15 | PFAM:PF03763 | SEG:seg | UniParc:UPI000295CD4A | UniProt:M0SFC2 | MapMan:35.2 |
Description
remorin family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G17060_001]
Coordinates
chr3:+:18307825..18309504
Molecular Weight (calculated)
38608.8 Da
IEP (calculated)
9.639
GRAVY (calculated)
-1.066
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPVESKGSC SHESVQDHHS CNAYGFEFHS GAGPTKALHH HKALGSRAKP TPSKWDDAQK WLVGLSARAD HKHSVSKPRN SNADDRRLLT SLSQRGRDSC
101: SSADGVLEDD MVLAVAAQDA AETKKVDCNE PLWRTNKPSE DSSVVVRSVC LRDASTEMTP IASKEPSRTG TPLRATTPVL KSPLSSRSST PGRTRQGAEQ
201: HDDHQPGMRN PERRTEAVNA SEQDQNMDSL ESQATAWDEA ERAKYTARYK REEVKIQAWE NHEKRKAETE MRRMEVKAER MRSRAQEKHA SRLAAARRMA
301: EEKRANAEGR LNEHAARTSE RADYIRRTGH LPSSFFSFKL SSLCG
101: SSADGVLEDD MVLAVAAQDA AETKKVDCNE PLWRTNKPSE DSSVVVRSVC LRDASTEMTP IASKEPSRTG TPLRATTPVL KSPLSSRSST PGRTRQGAEQ
201: HDDHQPGMRN PERRTEAVNA SEQDQNMDSL ESQATAWDEA ERAKYTARYK REEVKIQAWE NHEKRKAETE MRRMEVKAER MRSRAQEKHA SRLAAARRMA
301: EEKRANAEGR LNEHAARTSE RADYIRRTGH LPSSFFSFKL SSLCG
001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
Arabidopsis Description
F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.