Factsheet for Zm00001d050790_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85140	Sorghum	cytosol	85.55	80.78
TraesCS4D01G075000.1	Wheat	nucleus	67.55	64.87
TraesCS4A01G238400.1	Wheat	nucleus	66.67	64.76
HORVU4Hr1G012760.3	Barley	nucleus	66.96	64.67
TraesCS4B01G076500.1	Wheat	nucleus	66.96	64.12
GSMUA_Achr9P07790_001	Banana	nucleus	55.16	59.55
GSMUA_Achr3P17060_001	Banana	nucleus	54.87	53.91
AT1G67590.1	Thale cress	nucleus	48.38	47.26
CDY01823	Canola	nucleus	49.26	47.18
VIT_01s0010g02560.t01	Wine grape	nucleus	49.56	46.8
CDX96080	Canola	nucleus	48.97	46.76
CDY32543	Canola	nucleus	48.38	46.46
CDY12657	Canola	cytosol	48.38	46.46
Bra033989.1-P	Field mustard	cytosol	48.38	46.2
Solyc05g014710.2.1	Tomato	nucleus	46.31	44.86
PGSC0003DMT400044982	Potato	nucleus	46.02	44.83
Bra004237.1-P	Field mustard	nucleus	41.0	43.71
Zm00001d051005_P001	Maize	mitochondrion, nucleus	37.17	40.51
KRH58742	Soybean	nucleus	43.66	40.33
KRH42640	Soybean	nucleus	43.36	40.05
Zm00001d034558_P001	Maize	nucleus	19.47	25.38
Zm00001d006626_P001	Maize	nucleus	19.47	25.29
Zm00001d027403_P001	Maize	nucleus	30.38	24.29
Zm00001d048481_P001	Maize	cytosol, mitochondrion, nucleus	30.09	24.23
Zm00001d021839_P001	Maize	nucleus	20.65	23.81
Zm00001d054034_P001	Maize	nucleus	33.92	20.87
Zm00001d041496_P001	Maize	nucleus	23.3	20.73
Zm00001d002274_P001	Maize	nucleus, plastid	28.91	17.35
Zm00001d048829_P001	Maize	plastid	22.71	16.74

Protein Annotations

EMBL:EU964516	EnsemblPlants:Zm00001d050790_P003	EnsemblPlants:Zm00001d050790_T003	EnsemblPlantsGene:Zm00001d050790	EntrezGene:100283369	InterPro:Remorin_C
ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF15	PFAM:PF03763	ProteinID:AQK53051.1	ProteinID:AQK53052.1
ProteinID:AQK53053.1	ProteinID:AQK53054.1	ProteinID:AQK53055.1	ProteinID:AQK53057.1	SEG:seg	UniParc:UPI000182DEF8
UniProt:B6THQ1	MapMan:35.2	:	:	:	:

Description

DNA binding protein%3B DNA binding protein isoform 1%3B DNA binding protein isoform 2%3B DNA binding protein isoform 3

Coordinates

chr4:+:123187754..123191099

Molecular Weight (calculated)

36925.7 Da

IEP (calculated)

10.108

GRAVY (calculated)

-0.781

Length

339 amino acids

Sequence
(BLAST)

001: MNSDYTTNKG ANGRPHGKKN QALARPKATP SKWDDAQKWL VGMSNGHADG THGARVKPRS SNADDRRLLG SASQNGRVSC SSVDGALEYS MVVAAPSTPP
101: QAAEGGGDME ETKKIDCMVQ LHDSPQAVMR SVCLRDMGTE MTPIASKEPS RTPTPRRACT PVALSPMASR SSTPVRRRQE GPVGVTTAIV AGTLTEQVAA
201: ADEVACVGDE RPVAGHVPSV NSLESRAAAW DEAERAKFMA RYKREEVKIQ AWENHEKRKA ETKMKKMQMK ADQMKARGQE ELSNRLATTR RMAEEKRASA
301: EAKLNERAAR TSEKANYIRR TGHLPSSFKI SCLCGSSFE

Best Arabidopsis Sequence Match ( AT1G67590.1 )
(BLAST)

001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ

Arabidopsis Description

F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.