Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY12657 | Canola | cytosol | 97.17 | 97.17 |
Bra033989.1-P | Field mustard | cytosol | 97.45 | 96.9 |
CDY01823 | Canola | nucleus | 87.25 | 87.01 |
CDX96080 | Canola | nucleus | 87.25 | 86.76 |
AT1G67590.1 | Thale cress | nucleus | 82.72 | 84.15 |
PGSC0003DMT400044982 | Potato | nucleus | 56.66 | 57.47 |
VIT_01s0010g02560.t01 | Wine grape | nucleus | 58.36 | 57.38 |
Solyc05g014710.2.1 | Tomato | nucleus | 56.66 | 57.14 |
GSMUA_Achr9P07790_001 | Banana | nucleus | 49.58 | 55.73 |
TraesCS4A01G238400.1 | Wheat | nucleus | 52.12 | 52.72 |
KRH58742 | Soybean | nucleus | 54.67 | 52.59 |
HORVU4Hr1G012760.3 | Barley | nucleus | 52.12 | 52.42 |
TraesCS4D01G075000.1 | Wheat | nucleus | 52.12 | 52.12 |
KRH42640 | Soybean | nucleus | 54.11 | 52.04 |
TraesCS4B01G076500.1 | Wheat | nucleus | 51.84 | 51.69 |
GSMUA_Achr3P17060_001 | Banana | nucleus | 49.86 | 51.01 |
Zm00001d050790_P003 | Maize | nucleus | 46.46 | 48.38 |
OQU85140 | Sorghum | cytosol | 47.59 | 46.8 |
Zm00001d051005_P001 | Maize | mitochondrion, nucleus | 35.41 | 40.19 |
EES05380 | Sorghum | mitochondrion | 35.69 | 37.84 |
CDY09386 | Canola | nucleus | 37.11 | 32.67 |
CDY03066 | Canola | nucleus | 35.98 | 31.51 |
Os02t0602000-01 | Rice | mitochondrion | 29.18 | 30.29 |
CDY15819 | Canola | nucleus | 37.39 | 29.86 |
CDY17607 | Canola | nucleus | 37.11 | 29.5 |
CDY09599 | Canola | nucleus | 34.56 | 25.63 |
CDY26269 | Canola | nucleus | 34.84 | 25.36 |
CDX90244 | Canola | nucleus | 33.43 | 23.6 |
CDY12047 | Canola | nucleus | 33.43 | 23.6 |
CDX79905 | Canola | nucleus | 17.85 | 23.42 |
CDY48774 | Canola | nucleus | 17.56 | 22.96 |
CDX72021 | Canola | nucleus | 16.43 | 21.32 |
CDY06095 | Canola | nucleus | 16.71 | 20.14 |
CDY68168 | Canola | nucleus | 22.95 | 19.33 |
CDY08209 | Canola | nucleus | 22.66 | 19.09 |
CDY36609 | Canola | cytosol | 24.93 | 13.69 |
CDY24070 | Canola | extracellular | 25.21 | 12.16 |
CDY62474 | Canola | nucleus | 22.1 | 8.92 |
CDY62472 | Canola | nucleus | 22.1 | 8.92 |
Protein Annotations
EnsemblPlants:CDY32543 | EnsemblPlantsGene:GSBRNA2T00052531001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF15 |
PFAM:PF03763 | ProteinID:CDY32543 | ProteinID:CDY32543.1 | SEG:seg | UniParc:UPI0004EE5453 | UniProt:A0A078H6Y3 |
MapMan:35.2 | : | : | : | : | : |
Description
BnaC02g17360DBnaC02g17360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6Y3]
Coordinates
chrLK032296:-:8058..9786
Molecular Weight (calculated)
38961.6 Da
IEP (calculated)
9.891
GRAVY (calculated)
-0.956
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSQGLEDNK GCLGPGTPEM NGHGNIGFEF QKGANRTPNH HRSTMGKPAP SKWDDAQKWL SGVGFSRGGG GGEKNHHSRS CKPRNSNADD LRLIASASQR
101: EREGGDQYVE YEDGDAAAGR PEVETKNVDC GEAGGSVWRK ESINPTAAIR SVCVRDMGTE MTPIGSQEPS RTATPVRATT PVGRSPVTSP VRASRRGETV
201: RMATEVATVT ETRSVASNNN ENIGLGDNSN TKAMNAMEAR AMAWDEAERS KFMARYKREE VKIQAWENHE KRKAEMEMKK MEVKAERMKA RAEEKLANKL
301: AATKRIAEER RANAEAKLNE MAARTSERAD YIRRSGHLPS SFSIKFPSFS LCW
101: EREGGDQYVE YEDGDAAAGR PEVETKNVDC GEAGGSVWRK ESINPTAAIR SVCVRDMGTE MTPIGSQEPS RTATPVRATT PVGRSPVTSP VRASRRGETV
201: RMATEVATVT ETRSVASNNN ENIGLGDNSN TKAMNAMEAR AMAWDEAERS KFMARYKREE VKIQAWENHE KRKAEMEMKK MEVKAERMKA RAEEKLANKL
301: AATKRIAEER RANAEAKLNE MAARTSERAD YIRRSGHLPS SFSIKFPSFS LCW
001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
Arabidopsis Description
F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.