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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY12657 Canola cytosol 97.17 97.17
Bra033989.1-P Field mustard cytosol 97.45 96.9
CDY01823 Canola nucleus 87.25 87.01
CDX96080 Canola nucleus 87.25 86.76
AT1G67590.1 Thale cress nucleus 82.72 84.15
PGSC0003DMT400044982 Potato nucleus 56.66 57.47
VIT_01s0010g02560.t01 Wine grape nucleus 58.36 57.38
Solyc05g014710.2.1 Tomato nucleus 56.66 57.14
GSMUA_Achr9P07790_001 Banana nucleus 49.58 55.73
TraesCS4A01G238400.1 Wheat nucleus 52.12 52.72
KRH58742 Soybean nucleus 54.67 52.59
HORVU4Hr1G012760.3 Barley nucleus 52.12 52.42
TraesCS4D01G075000.1 Wheat nucleus 52.12 52.12
KRH42640 Soybean nucleus 54.11 52.04
TraesCS4B01G076500.1 Wheat nucleus 51.84 51.69
GSMUA_Achr3P17060_001 Banana nucleus 49.86 51.01
Zm00001d050790_P003 Maize nucleus 46.46 48.38
OQU85140 Sorghum cytosol 47.59 46.8
Zm00001d051005_P001 Maize mitochondrion, nucleus 35.41 40.19
EES05380 Sorghum mitochondrion 35.69 37.84
CDY09386 Canola nucleus 37.11 32.67
CDY03066 Canola nucleus 35.98 31.51
Os02t0602000-01 Rice mitochondrion 29.18 30.29
CDY15819 Canola nucleus 37.39 29.86
CDY17607 Canola nucleus 37.11 29.5
CDY09599 Canola nucleus 34.56 25.63
CDY26269 Canola nucleus 34.84 25.36
CDX90244 Canola nucleus 33.43 23.6
CDY12047 Canola nucleus 33.43 23.6
CDX79905 Canola nucleus 17.85 23.42
CDY48774 Canola nucleus 17.56 22.96
CDX72021 Canola nucleus 16.43 21.32
CDY06095 Canola nucleus 16.71 20.14
CDY68168 Canola nucleus 22.95 19.33
CDY08209 Canola nucleus 22.66 19.09
CDY36609 Canola cytosol 24.93 13.69
CDY24070 Canola extracellular 25.21 12.16
CDY62474 Canola nucleus 22.1 8.92
CDY62472 Canola nucleus 22.1 8.92
Protein Annotations
EnsemblPlants:CDY32543EnsemblPlantsGene:GSBRNA2T00052531001InterPro:Remorin_Cncoils:CoilPANTHER:PTHR31471PANTHER:PTHR31471:SF15
PFAM:PF03763ProteinID:CDY32543ProteinID:CDY32543.1SEG:segUniParc:UPI0004EE5453UniProt:A0A078H6Y3
MapMan:35.2:::::
Description
BnaC02g17360DBnaC02g17360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6Y3]
Coordinates
chrLK032296:-:8058..9786
Molecular Weight (calculated)
38961.6 Da
IEP (calculated)
9.891
GRAVY (calculated)
-0.956
Length
353 amino acids
Sequence
(BLAST)
001: MRSQGLEDNK GCLGPGTPEM NGHGNIGFEF QKGANRTPNH HRSTMGKPAP SKWDDAQKWL SGVGFSRGGG GGEKNHHSRS CKPRNSNADD LRLIASASQR
101: EREGGDQYVE YEDGDAAAGR PEVETKNVDC GEAGGSVWRK ESINPTAAIR SVCVRDMGTE MTPIGSQEPS RTATPVRATT PVGRSPVTSP VRASRRGETV
201: RMATEVATVT ETRSVASNNN ENIGLGDNSN TKAMNAMEAR AMAWDEAERS KFMARYKREE VKIQAWENHE KRKAEMEMKK MEVKAERMKA RAEEKLANKL
301: AATKRIAEER RANAEAKLNE MAARTSERAD YIRRSGHLPS SFSIKFPSFS LCW
Best Arabidopsis Sequence Match ( AT1G67590.1 )
(BLAST)
001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
Arabidopsis Description
F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.