Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | CDY36943 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06095 | Canola | nucleus | 98.9 | 91.81 |
| Bra007335.1-P | Field mustard | nucleus | 98.16 | 91.13 |
| AT3G57540.1 | Thale cress | nucleus | 84.56 | 77.7 |
| Solyc10g080240.1.1 | Tomato | cytosol | 13.6 | 74.0 |
| CDX79905 | Canola | nucleus | 66.54 | 67.29 |
| CDY48774 | Canola | nucleus | 66.18 | 66.67 |
| KRG95278 | Soybean | nucleus | 50.37 | 50.55 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 49.63 | 49.82 |
| Zm00001d006626_P001 | Maize | nucleus | 44.12 | 45.98 |
| KRH33097 | Soybean | nucleus | 50.0 | 45.95 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 45.59 | 45.76 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 42.28 | 45.28 |
| KRH71974 | Soybean | nucleus | 49.26 | 44.82 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 44.49 | 44.49 |
| Zm00001d034558_P001 | Maize | nucleus | 41.91 | 43.85 |
| PGSC0003DMT400060978 | Potato | nucleus | 47.06 | 43.69 |
| Solyc04g015520.2.1 | Tomato | nucleus | 48.16 | 43.23 |
| Solyc10g080230.1.1 | Tomato | cytosol | 25.0 | 43.04 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 43.38 | 42.14 |
| Os03t0808300-01 | Rice | plasma membrane | 43.01 | 41.2 |
| Zm00001d021839_P001 | Maize | nucleus | 44.49 | 41.16 |
| PGSC0003DMT400070037 | Potato | nucleus | 47.79 | 41.01 |
| Os07t0208600-01 | Rice | nucleus | 38.97 | 40.46 |
| EER99573 | Sorghum | nucleus | 45.96 | 39.94 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 45.22 | 39.94 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 40.07 | 39.21 |
| OQU90788 | Sorghum | nucleus | 41.91 | 39.04 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 39.71 | 38.99 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 44.49 | 38.91 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 44.12 | 38.84 |
| Os07t0569100-01 | Rice | plasma membrane | 44.85 | 38.61 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 39.34 | 38.49 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 43.01 | 38.36 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 43.01 | 38.24 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 43.01 | 37.99 |
| KRH66963 | Soybean | nucleus | 31.25 | 37.78 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 39.34 | 37.68 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 43.38 | 34.91 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 39.34 | 34.52 |
| CDY12657 | Canola | cytosol | 21.69 | 16.71 |
| CDY01823 | Canola | nucleus | 21.69 | 16.67 |
| CDY32543 | Canola | nucleus | 21.32 | 16.43 |
| CDX96080 | Canola | nucleus | 21.32 | 16.34 |
| CDY09386 | Canola | nucleus | 21.32 | 14.46 |
| CDY03066 | Canola | nucleus | 21.32 | 14.39 |
| CDY17607 | Canola | nucleus | 23.16 | 14.19 |
| CDY15819 | Canola | nucleus | 22.43 | 13.8 |
| CDY12047 | Canola | nucleus | 20.22 | 11.0 |
| CDY68168 | Canola | nucleus | 16.91 | 10.98 |
| CDX90244 | Canola | nucleus | 19.85 | 10.8 |
| CDY08209 | Canola | nucleus | 16.54 | 10.74 |
| CDY09599 | Canola | nucleus | 18.75 | 10.71 |
| CDY26269 | Canola | nucleus | 18.75 | 10.52 |
| CDY36609 | Canola | cytosol | 16.18 | 6.84 |
| CDY24070 | Canola | extracellular | 16.91 | 6.28 |
| CDY62474 | Canola | nucleus | 13.6 | 4.23 |
| CDY62472 | Canola | nucleus | 13.6 | 4.23 |
Protein Annotations
| EnsemblPlants:CDX72021 | EnsemblPlantsGene:GSBRNA2T00155801001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF7 |
| PFAM:PF03763 | ProteinID:CDX72021 | ProteinID:CDX72021.1 | SEG:seg | UniParc:UPI0004EF389F | MapMan:35.1 |
Description
BnaC08g28530D
Coordinates
chrLK031795:+:1880224..1881828
Molecular Weight (calculated)
30204.1 Da
IEP (calculated)
10.275
GRAVY (calculated)
-0.862
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTLYSQESS STEITTTTST DASDSRDETP PSETVVRDIH AMTTTELPRP QQRGGHLSPT RSVNFSDGAS SAGENFTTVS REFNALVIAG SSMDTNNNSN
101: GNNQSISHRD VPEEDTNPWA IVPDGYDNRA GSENIVTTTS SSGQNRMVTA ASVQRVKRDE VEAKITAWQT AKLAKINNRF KRQEAFINGW LNEQVHKANS
201: WMKKIERKLE ERRAKAMEKT QNKVAKAQRK AEERRATAEA KRGTEVARVL EVSNLMRAVG RPPAKRSFFS IS
101: GNNQSISHRD VPEEDTNPWA IVPDGYDNRA GSENIVTTTS SSGQNRMVTA ASVQRVKRDE VEAKITAWQT AKLAKINNRF KRQEAFINGW LNEQVHKANS
201: WMKKIERKLE ERRAKAMEKT QNKVAKAQRK AEERRATAEA KRGTEVARVL EVSNLMRAVG RPPAKRSFFS IS
001: MLTLYGQERS PENSTTSTTD ASDRRDETPS SEIVVRDIHA MTTTTELTRP QQRGSGGGYL SPSRSIAFSD GTTSSGENFT TVSREFNALV IAGSSMDNNS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q93YN8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.