Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08209 | Canola | nucleus | 97.14 | 97.14 |
| AT1G53860.1 | Thale cress | nucleus | 82.82 | 78.51 |
| PGSC0003DMT400023636 | Potato | nucleus | 32.46 | 58.12 |
| CDY36609 | Canola | cytosol | 79.24 | 51.63 |
| VIT_09s0002g00360.t01 | Wine grape | nucleus | 49.88 | 45.83 |
| CDY24070 | Canola | extracellular | 78.52 | 44.95 |
| Solyc03g123590.2.1 | Tomato | nucleus | 47.49 | 42.7 |
| KRH47718 | Soybean | nucleus | 45.58 | 40.72 |
| GSMUA_Achr10P... | Banana | nucleus | 42.96 | 40.0 |
| KRH06283 | Soybean | cytosol | 45.11 | 39.96 |
| TraesCS2B01G363600.1 | Wheat | plastid | 38.19 | 38.74 |
| GSMUA_Achr2P07310_001 | Banana | nucleus | 45.82 | 38.55 |
| TraesCS2D01G343900.1 | Wheat | plastid | 38.19 | 38.55 |
| HORVU2Hr1G084090.2 | Barley | plastid | 38.42 | 38.52 |
| Os11t0616300-01 | Rice | nucleus | 42.24 | 35.9 |
| Zm00001d048829_P001 | Maize | plastid | 36.52 | 33.26 |
| EES10116 | Sorghum | nucleus, plastid | 38.42 | 31.51 |
| CDY32543 | Canola | nucleus | 19.33 | 22.95 |
| CDY12657 | Canola | cytosol | 19.33 | 22.95 |
| CDY01823 | Canola | nucleus | 19.33 | 22.88 |
| CDX96080 | Canola | nucleus | 19.33 | 22.82 |
| CDY09386 | Canola | nucleus | 20.53 | 21.45 |
| CDY15819 | Canola | nucleus | 21.96 | 20.81 |
| CDY03066 | Canola | nucleus | 19.81 | 20.6 |
| CDY17607 | Canola | nucleus | 21.72 | 20.5 |
| CDX79905 | Canola | nucleus | 12.41 | 19.33 |
| CDY09599 | Canola | nucleus | 21.96 | 19.33 |
| CDY48774 | Canola | nucleus | 12.17 | 18.89 |
| CDY12047 | Canola | nucleus | 22.2 | 18.6 |
| CDY26269 | Canola | nucleus | 21.48 | 18.56 |
| CDX90244 | Canola | nucleus | 21.72 | 18.2 |
| CDX72021 | Canola | nucleus | 10.98 | 16.91 |
| CDY06095 | Canola | nucleus | 11.22 | 16.04 |
| CDY62474 | Canola | nucleus | 15.51 | 7.44 |
| CDY62472 | Canola | nucleus | 15.51 | 7.44 |
Protein Annotations
| EnsemblPlants:CDY68168 | EnsemblPlantsGene:GSBRNA2T00070004001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF3 |
| PFAM:PF03763 | ProteinID:CDY68168 | ProteinID:CDY68168.1 | SEG:seg | UniParc:UPI0004EEA48D | UniProt:A0A078JKX8 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaCnng57840DBnaCnng57840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKX8]
Coordinates
chrLK036926:-:2972..4973
Molecular Weight (calculated)
47797.0 Da
IEP (calculated)
8.972
GRAVY (calculated)
-0.913
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MDITRNSNTK LHLQTQSLFP PNMEKTVDLE PRMNTNPFEE DSLISRINPN KNADLSSSSS SSDMVNERRE SFSSQKSIGE GRSSGQRRVM LMESPCTPGR
101: GVFSFSSNVS GRRRNFPSKW VDAEKWVTSG HESPAHSLKV VYSEKSRVTE EKVSLSPPGL ILKDKLANEV LPSTEGFIFR DSDKFLQFQE EEEAQVQHRD
201: MGTEMTPTGS VTASRCHTPF KSISPARHNT PSKMSGPLTE TKNVIDISEF ADKLRLSGSA ATQYYSSVTH WNSREEEEEE ISKSLRQIDM ESELRRSVSE
301: SKAVLWDGQD DKIKFCQRYQ REEAKIQAWV NLQNAKAEAQ SKKLEMKIQK MRSNFEEKLM KRMDTVHRRA EDWRATARQQ HAEQLHRAAE TARKLTNRRG
401: YLVSGRSSCG CIPYTNTCH
101: GVFSFSSNVS GRRRNFPSKW VDAEKWVTSG HESPAHSLKV VYSEKSRVTE EKVSLSPPGL ILKDKLANEV LPSTEGFIFR DSDKFLQFQE EEEAQVQHRD
201: MGTEMTPTGS VTASRCHTPF KSISPARHNT PSKMSGPLTE TKNVIDISEF ADKLRLSGSA ATQYYSSVTH WNSREEEEEE ISKSLRQIDM ESELRRSVSE
301: SKAVLWDGQD DKIKFCQRYQ REEAKIQAWV NLQNAKAEAQ SKKLEMKIQK MRSNFEEKLM KRMDTVHRRA EDWRATARQQ HAEQLHRAAE TARKLTNRRG
401: YLVSGRSSCG CIPYTNTCH
001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH
Arabidopsis Description
At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.