Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040560.1-P | Field mustard | nucleus | 79.19 | 83.53 |
| CDY08209 | Canola | nucleus | 79.19 | 83.53 |
| CDY68168 | Canola | nucleus | 78.51 | 82.82 |
| PGSC0003DMT400023636 | Potato | nucleus | 32.13 | 60.68 |
| VIT_09s0002g00360.t01 | Wine grape | nucleus | 52.49 | 50.88 |
| CDY36609 | Canola | cytosol | 73.3 | 50.39 |
| Bra039695.1-P | Field mustard | cytosol | 72.62 | 47.35 |
| Solyc03g123590.2.1 | Tomato | nucleus | 49.55 | 47.0 |
| KRH47718 | Soybean | nucleus | 49.55 | 46.7 |
| KRH06283 | Soybean | cytosol | 49.55 | 46.3 |
| CDY24070 | Canola | extracellular | 72.17 | 43.58 |
| GSMUA_Achr10P... | Banana | nucleus | 43.67 | 42.89 |
| GSMUA_Achr2P07310_001 | Banana | nucleus | 46.83 | 41.57 |
| TraesCS2B01G363600.1 | Wheat | plastid | 37.78 | 40.44 |
| TraesCS2D01G343900.1 | Wheat | plastid | 37.78 | 40.24 |
| HORVU2Hr1G084090.2 | Barley | plastid | 38.01 | 40.19 |
| Os11t0616300-01 | Rice | nucleus | 42.76 | 38.34 |
| Zm00001d048829_P001 | Maize | plastid | 36.2 | 34.78 |
| EES10116 | Sorghum | nucleus, plastid | 39.37 | 34.05 |
| AT1G67590.1 | Thale cress | nucleus | 20.14 | 25.65 |
| AT1G30320.1 | Thale cress | nucleus, plastid | 23.76 | 20.63 |
| AT2G02170.2 | Thale cress | nucleus | 22.62 | 20.58 |
| AT2G41870.1 | Thale cress | nucleus | 11.99 | 19.34 |
| AT3G57540.1 | Thale cress | nucleus | 10.41 | 15.54 |
| Bra040561.1-P | Field mustard | cytosol | 0.9 | 1.69 |
Protein Annotations
| MapMan:35.2 | EntrezGene:841823 | ProteinID:AEE33011.1 | ProteinID:ANM58877.1 | ArrayExpress:AT1G53860 | EnsemblPlantsGene:AT1G53860 |
| RefSeq:AT1G53860 | TAIR:AT1G53860 | RefSeq:AT1G53860-TAIR-G | EnsemblPlants:AT1G53860.1 | TAIR:AT1G53860.1 | EMBL:BT015079 |
| EMBL:BT015903 | ncoils:Coil | GO:GO:0005575 | GO:GO:0008150 | RefSeq:NP_001321281.1 | RefSeq:NP_175789.2 |
| PFAM:PF03763 | PO:PO:0000037 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0025022 | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF3 | UniProt:Q6DBE3 | InterPro:Remorin_C | UniParc:UPI000034F49A |
| SEG:seg | : | : | : | : | : |
Description
At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
Coordinates
chr1:-:20107017..20109665
Molecular Weight (calculated)
50552.1 Da
IEP (calculated)
8.331
GRAVY (calculated)
-0.918
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.