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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08209 Canola nucleus 100.0 100.0
AT1G53860.1 Thale cress nucleus 83.53 79.19
PGSC0003DMT400023636 Potato nucleus 32.22 57.69
Bra039695.1-P Field mustard cytosol 79.95 49.41
VIT_09s0002g00360.t01 Wine grape nucleus 49.88 45.83
Solyc03g123590.2.1 Tomato nucleus 46.78 42.06
KRH47718 Soybean nucleus 45.82 40.94
GSMUA_Achr10P... Banana nucleus 43.44 40.44
KRH06283 Soybean cytosol 45.58 40.38
TraesCS2B01G363600.1 Wheat plastid 38.42 38.98
TraesCS2D01G343900.1 Wheat plastid 38.42 38.8
HORVU2Hr1G084090.2 Barley plastid 38.66 38.76
GSMUA_Achr2P07310_001 Banana nucleus 46.06 38.76
Os11t0616300-01 Rice nucleus 42.48 36.11
Zm00001d048829_P001 Maize plastid 36.75 33.48
EES10116 Sorghum nucleus, plastid 38.42 31.51
Bra033989.1-P Field mustard cytosol 19.09 22.54
Bra026612.1-P Field mustard nucleus 21.96 22.17
Bra024828.1-P Field mustard nucleus 21.48 20.0
Bra004237.1-P Field mustard nucleus 14.8 19.5
Bra032380.1-P Field mustard nucleus 21.72 18.76
Bra004657.1-P Field mustard cytosol 11.93 18.52
Bra010777.1-P Field mustard nucleus 21.48 16.7
Bra007335.1-P Field mustard nucleus 10.5 15.02
Bra040561.1-P Field mustard cytosol 0.72 1.27
Protein Annotations
EnsemblPlants:Bra040560.1EnsemblPlants:Bra040560.1-PEnsemblPlantsGene:Bra040560InterPro:Remorin_Cncoils:CoilPANTHER:PTHR31471
PANTHER:PTHR31471:SF3PFAM:PF03763SEG:segUniParc:UPI000253EE14UniProt:M4FHI2MapMan:35.2
Description
AT1G53860 (E=1e-177) | remorin family protein
Coordinates
chrScaffold000218:+:22095..24097
Molecular Weight (calculated)
47744.0 Da
IEP (calculated)
9.035
GRAVY (calculated)
-0.923
Length
419 amino acids
Sequence
(BLAST)
001: MDITRNSNTK LHLQTQSLFP PNMEKTVDVE PRMDTNPFAE DSLTSRINPN KNADLSSSSS SSDMVNERRQ SFSSQKSIGE GRSSGQRRVM LMESPCTPGR
101: GVFSFSSNVS GRRRNFPSKW VDAEKWVTSG HESPAHSLKV VYSEKSRVTE EKVSLSPPGL ILKDKLANEV LPSTEGFIFR DSDKFLQFQE EEEAQVQHRD
201: MGTEMTPAGS VTASRCHTPF KSMSPARHNT PSKMSGPLTE TKNVIDISEF ADKLRLSGSA ATQYYNSVTH WNSREEEEEE ISKSLRQMDM ESELRRSVSE
301: SKAVLWDGQD DKIKFCQRYQ REEAKIQAWV NLQNAKAEAQ SRKLEMKIQK MRSNFEEKLM KRMDTVHRRA EDWRATTRQQ HAEQLHRAAE TARKLTNRRG
401: YLVSGRSSCG CIPCTNTCH
Best Arabidopsis Sequence Match ( AT1G53860.1 )
(BLAST)
001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH
Arabidopsis Description
At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.