Factsheet for Solyc03g123590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023636	Potato	nucleus	48.71	97.01
VIT_09s0002g00360.t01	Wine grape	nucleus	63.73	65.13
KRH47718	Soybean	nucleus	56.22	55.86
KRH06283	Soybean	cytosol	56.65	55.81
GSMUA_Achr10P...	Banana	nucleus	48.07	49.78
AT1G53860.1	Thale cress	nucleus	47.0	49.55
GSMUA_Achr2P07310_001	Banana	nucleus	50.86	47.59
CDY68168	Canola	nucleus	42.7	47.49
Bra040560.1-P	Field mustard	nucleus	42.06	46.78
CDY08209	Canola	nucleus	42.06	46.78
TraesCS2B01G363600.1	Wheat	plastid	37.77	42.62
TraesCS2D01G343900.1	Wheat	plastid	37.77	42.41
Os11t0616300-01	Rice	nucleus	44.85	42.39
HORVU2Hr1G084090.2	Barley	plastid	37.55	41.87
EES10116	Sorghum	nucleus, plastid	39.91	36.4
Zm00001d048829_P001	Maize	plastid	35.19	35.65
Solyc10g080240.1.1	Tomato	cytosol	3.43	32.0
CDY36609	Canola	cytosol	40.99	29.7
Bra039695.1-P	Field mustard	cytosol	40.56	27.88
CDY24070	Canola	extracellular	40.34	25.68
Solyc05g014710.2.1	Tomato	nucleus	18.88	25.14
Solyc01g008180.2.1	Tomato	nucleus	24.25	21.65
Solyc08g045640.2.1	Tomato	mitochondrion	20.6	19.43
Solyc10g080230.1.1	Tomato	cytosol	6.22	18.35
Solyc04g015520.2.1	Tomato	nucleus	9.66	14.85
Bra040561.1-P	Field mustard	cytosol	0.43	0.84

Protein Annotations

EnsemblPlants:Solyc03g123590.2.1	EnsemblPlantsGene:Solyc03g123590.2	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF3
PFAM:PF03763	SEG:seg	UniParc:UPI0002765BFB	UniProt:K4BN58	MapMan:35.2	:

Description

No Description!

Coordinates

chr3:+:70399637..70402601

Molecular Weight (calculated)

52298.5 Da

IEP (calculated)

8.185

GRAVY (calculated)

-0.770

Length

466 amino acids

Sequence
(BLAST)

001: MDLARANYCE PPSQGEAALE GKNGNPFLDS FPDPLCKLNL KETSEFVKSL PTASNGAAGF LRKEGVSSVT RRNMDAPSTP GRPIFSFSVG NFSRKNFPSK
101: WDDAEKWLVN GSSIQDSPAS HHNNNGLKPA LESSNLLKQC NGFKLKETEN VFAEKNRVTD EKVSKVASDF QVLLPLHHHH ISAGAANTVS AATDVFLKDK
201: FTDEVESIYP KFRCLEPTKE GFLFGNAAGK SMKEAIHEIK HRDIGTEMTP IGSSTTSRCH TPFKSPSPAR HNNPADRSGP LPLPSSGSDS TVDIMQFEEC
301: HLAKLQFGTQ FDSVTTNWSS REEEEEDVSK SLRHFEINNE CRKSVSESKT RSWEEEEKNK CCLRYQREEA KIQAWVNLQN AKAEAQSKKL EVKIQKMKSN
401: LEEKLMKRMA IVHRKAEEWR TTAQLQHKDQ IEKVADQSRK MMLTRQNSHL SAQSSCGCLP CRNHLI

Best Arabidopsis Sequence Match ( AT1G53860.1 )
(BLAST)

001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH

Arabidopsis Description

At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.