Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0010g01760.t01 | Wine grape | nucleus | 65.9 | 67.45 |
| KRH42459 | Soybean | nucleus | 59.96 | 61.37 |
| CDY09386 | Canola | nucleus | 47.13 | 61.35 |
| KRH58560 | Soybean | nucleus | 59.58 | 61.34 |
| CDY15819 | Canola | nucleus | 50.57 | 59.73 |
| Bra026612.1-P | Field mustard | nucleus | 47.32 | 59.52 |
| CDY03066 | Canola | nucleus | 45.79 | 59.31 |
| GSMUA_Achr5P11780_001 | Banana | cytosol | 36.4 | 58.82 |
| CDY17607 | Canola | nucleus | 49.43 | 58.11 |
| Bra024828.1-P | Field mustard | nucleus | 49.81 | 57.78 |
| AT2G02170.2 | Thale cress | nucleus | 53.07 | 57.0 |
| GSMUA_Achr1P02030_001 | Banana | nucleus | 50.96 | 54.29 |
| Os02t0116800-01 | Rice | nucleus | 50.96 | 52.16 |
| TraesCS6B01G062500.1 | Wheat | nucleus | 50.19 | 51.57 |
| TraesCS6A01G046400.1 | Wheat | nucleus | 50.0 | 51.38 |
| TraesCS6D01G053500.1 | Wheat | nucleus | 49.81 | 51.08 |
| HORVU0Hr1G040310.2 | Barley | cytosol, mitochondrion, nucleus | 50.19 | 50.97 |
| GSMUA_Achr11P... | Banana | nucleus | 47.89 | 50.92 |
| GSMUA_Achr2P10980_001 | Banana | nucleus | 40.61 | 50.36 |
| Zm00001d054034_P001 | Maize | nucleus | 50.38 | 47.73 |
| EES06158 | Sorghum | nucleus, plastid | 50.77 | 46.49 |
| GSMUA_Achr5P19220_001 | Banana | nucleus | 37.16 | 45.86 |
| Os03t0120200-01 | Rice | nucleus | 36.97 | 45.63 |
| Zm00001d027403_P001 | Maize | nucleus | 36.4 | 44.81 |
| TraesCS5A01G517700.1 | Wheat | nucleus | 36.02 | 44.55 |
| KXG40319 | Sorghum | nucleus | 36.02 | 44.34 |
| TraesCS4D01G343800.1 | Wheat | nucleus | 35.82 | 44.31 |
| Zm00001d048481_P001 | Maize | cytosol, mitochondrion, nucleus | 35.44 | 43.94 |
| TraesCS4B01G349100.1 | Wheat | nucleus | 35.63 | 43.87 |
| Solyc10g080240.1.1 | Tomato | cytosol | 3.83 | 40.0 |
| HORVU4Hr1G085140.6 | Barley | nucleus, plastid | 35.44 | 38.3 |
| Solyc05g014710.2.1 | Tomato | nucleus | 25.67 | 38.29 |
| Solyc08g045640.2.1 | Tomato | mitochondrion | 34.48 | 36.44 |
| Solyc03g123590.2.1 | Tomato | nucleus | 21.65 | 24.25 |
| Solyc04g015520.2.1 | Tomato | nucleus | 11.88 | 20.46 |
| Solyc10g080230.1.1 | Tomato | cytosol | 5.94 | 19.62 |
Protein Annotations
| EnsemblPlants:Solyc01g008180.2.1 | EnsemblPlantsGene:Solyc01g008180.2 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 |
| InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF1 | PFAM:PF03763 | SEG:seg |
| UniParc:UPI0002762F15 | UniProt:K4AT16 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1:-:2327830..2334359
Molecular Weight (calculated)
58108.4 Da
IEP (calculated)
9.049
GRAVY (calculated)
-0.793
Length
522 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYERIDKRN LQLSPRKLRS MLLGAEKKRK QEGKDDVVED QELESATVSL RSHLPEIHES GCNLENYKDV NVVSVVPESS TSLALDSSMS LEMINDTRIK
101: DQSLVSTRIR SQDDSSLDCD GGIDSVGTVS PLFEFQKAER AAQRVPLAHF SKPAPSKWDD AQKWIASPTS NRPKTGQSSQ VVGSRKTSHS GYGYRQQSTK
201: VVVEVPDQKL VPYEEPVDTK QIDSGQPKDS GVQKFVSWEA EPHPIAESYV KPMLMIETSI GQSAINLSRH DSSVSIHSAT VIPPPSTARS VSMRDMGTEM
301: TPIASQEPSR TGTPVRATTP TRSPTSSRPS TPGAAPASSP FRPSNDNLDA HTNALSDQEL QLKTRREIMA LGTKLGKMNI AAWASKDGED RNASSLLKTD
401: KQDQPNTTVT ETRAAAWEDA EKAKHLARFK REEIKIQAWE NHQQAKTEAE MRKTEVEVEK MKARAQDKLM NKIAAVRYKA EEKLAAAEAR RNKHAVKIEK
501: QAEYIRKTGR LPHSFSCCRW CF
101: DQSLVSTRIR SQDDSSLDCD GGIDSVGTVS PLFEFQKAER AAQRVPLAHF SKPAPSKWDD AQKWIASPTS NRPKTGQSSQ VVGSRKTSHS GYGYRQQSTK
201: VVVEVPDQKL VPYEEPVDTK QIDSGQPKDS GVQKFVSWEA EPHPIAESYV KPMLMIETSI GQSAINLSRH DSSVSIHSAT VIPPPSTARS VSMRDMGTEM
301: TPIASQEPSR TGTPVRATTP TRSPTSSRPS TPGAAPASSP FRPSNDNLDA HTNALSDQEL QLKTRREIMA LGTKLGKMNI AAWASKDGED RNASSLLKTD
401: KQDQPNTTVT ETRAAAWEDA EKAKHLARFK REEIKIQAWE NHQQAKTEAE MRKTEVEVEK MKARAQDKLM NKIAAVRYKA EEKLAAAEAR RNKHAVKIEK
501: QAEYIRKTGR LPHSFSCCRW CF
001: MDYERIGKTQ VTSSGGGFSP GKLRSMLLLG VDRKKNEEEE STPTMRSGSN QIDDPRVYVA SGLDDCKDVD VVSEITDCST SGIARSISLG LQEYSDYDNV
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
Arabidopsis Description
At2g02170/F5O4.6 [Source:UniProtKB/TrEMBL;Acc:Q9ZUM1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.