Factsheet for Solyc05g014710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044982	Potato	nucleus	97.71	98.28
VIT_01s0010g02560.t01	Wine grape	nucleus	68.0	66.3
AT1G67590.1	Thale cress	nucleus	58.0	58.5
KRH58742	Soybean	nucleus	61.14	58.31
KRH42640	Soybean	nucleus	60.86	58.04
CDY12657	Canola	cytosol	58.0	57.51
Bra033989.1-P	Field mustard	cytosol	58.0	57.18
CDY01823	Canola	nucleus	57.43	56.78
CDY32543	Canola	nucleus	57.14	56.66
CDX96080	Canola	nucleus	57.43	56.62
GSMUA_Achr9P07790_001	Banana	nucleus	49.71	55.41
Bra004237.1-P	Field mustard	nucleus	47.71	52.52
GSMUA_Achr3P17060_001	Banana	nucleus	50.0	50.72
TraesCS4A01G238400.1	Wheat	nucleus	49.43	49.57
HORVU4Hr1G012760.3	Barley	nucleus	49.43	49.29
TraesCS4D01G075000.1	Wheat	nucleus	49.43	49.01
TraesCS4B01G076500.1	Wheat	nucleus	49.14	48.59
Zm00001d050790_P003	Maize	nucleus	44.86	46.31
OQU85140	Sorghum	cytosol	45.71	44.57
Zm00001d051005_P001	Maize	mitochondrion, nucleus	33.71	37.94
Solyc10g080240.1.1	Tomato	cytosol	5.14	36.0
EES05380	Sorghum	mitochondrion	33.71	35.44
Os02t0602000-01	Rice	mitochondrion	30.57	31.47
Solyc01g008180.2.1	Tomato	nucleus	38.29	25.67
Solyc08g045640.2.1	Tomato	mitochondrion	34.29	24.29
Solyc10g080230.1.1	Tomato	cytosol	8.86	19.62
Solyc04g015520.2.1	Tomato	nucleus	16.57	19.14
Solyc03g123590.2.1	Tomato	nucleus	25.14	18.88

Protein Annotations

EnsemblPlants:Solyc05g014710.2.1	EnsemblPlantsGene:Solyc05g014710.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF15	PFAM:PF03763	SEG:seg
UniParc:UPI00027666BA	UniProt:K4BYJ0	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5:+:8844932..8846789

Molecular Weight (calculated)

39515.3 Da

IEP (calculated)

9.464

GRAVY (calculated)

-0.991

Length

350 amino acids

Sequence
(BLAST)

001: MRSIEDKGCL NYGQKEQEVV GGSSMNFEFH GTNRASTHHR TAALGKPTPS KWDDAQKWLV NLSRGEKHQS KATPRNSNAD DLRLIAPVPK KEEYSSDDEG
101: DSSMIQFEVE TKKVDCDESI WRINKNNNNF ASVVRSICVR DMGTEMTPIA SQEPSRTATP IRATTPAVRS PISSGSSTPI RGQNGTIENG QIVANIGQNR
201: GNAGTTRVVR DVEETIDNEL AAKKETDHPN KVNPLETRAM AWDEAERAKY MARYKREEVK IQAWENHEKR KAEMEMKRME VKAERIKARA EEKYKNKLAA
301: SRRIAEEKRG NAEAELNEKA VKTSEKADYI RRTGHLPSSF SFKLPSSFCW

Best Arabidopsis Sequence Match ( AT1G67590.1 )
(BLAST)

001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ

Arabidopsis Description

F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.