Factsheet for VIT_01s0010g02560.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044982	Potato	nucleus	66.3	68.39
Solyc05g014710.2.1	Tomato	nucleus	66.3	68.0
GSMUA_Achr9P07790_001	Banana	nucleus	53.2	60.83
KRH58742	Soybean	nucleus	61.28	59.95
CDY12657	Canola	cytosol	57.94	58.92
Bra033989.1-P	Field mustard	cytosol	57.94	58.59
KRH42640	Soybean	nucleus	59.89	58.58
CDY32543	Canola	nucleus	57.38	58.36
CDY01823	Canola	nucleus	57.38	58.19
CDX96080	Canola	nucleus	57.38	58.03
AT1G67590.1	Thale cress	nucleus	55.71	57.64
GSMUA_Achr3P17060_001	Banana	nucleus	53.76	55.94
Bra004237.1-P	Field mustard	nucleus	48.47	54.72
TraesCS4A01G238400.1	Wheat	nucleus	50.97	52.44
HORVU4Hr1G012760.3	Barley	nucleus	50.97	52.14
TraesCS4D01G075000.1	Wheat	nucleus	51.25	52.12
TraesCS4B01G076500.1	Wheat	nucleus	50.7	51.41
Zm00001d050790_P003	Maize	nucleus	46.8	49.56
OQU85140	Sorghum	cytosol	47.35	47.35
Zm00001d051005_P001	Maize	mitochondrion, nucleus	34.82	40.19
EES05380	Sorghum	mitochondrion	34.26	36.94
Os02t0602000-01	Rice	mitochondrion	28.41	30.0
VIT_01s0010g01760.t01	Wine grape	nucleus	37.6	26.47
VIT_10s0003g04090.t01	Wine grape	nucleus	36.77	25.1
VIT_08s0007g08280.t01	Wine grape	nucleus	18.11	23.99
VIT_09s0002g00360.t01	Wine grape	nucleus	26.18	20.61

Protein Annotations

EntrezGene:100853782	wikigene:100853782	MapMan:35.1	ProteinID:CCB51243	ProteinID:CCB51243.1	ncoils:Coil
UniProt:F6HG50	EMBL:FN595754	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
EntrezGene:LOC100853782	wikigene:LOC100853782	PFAM:PF03763	PANTHER:PTHR31471	PANTHER:PTHR31471:SF15	InterPro:Remorin_C
UniParc:UPI0002109E3D	ArrayExpress:VIT_01s0010g02560	EnsemblPlantsGene:VIT_01s0010g02560	EnsemblPlants:VIT_01s0010g02560.t01	RefSeq:XP_003631322	RefSeq:XP_003631322.1

Description

No Description!

Coordinates

chr1:-:19616036..19617701

Molecular Weight (calculated)

39908.3 Da

IEP (calculated)

9.202

GRAVY (calculated)

-1.081

Length

359 amino acids

Sequence
(BLAST)

001: MRSIEDKGCC NYGPTKDISS SSAISFEFPK GNGTNRTTHH RTALGKPTPS KWDDAQKWLV GLSGGGEKNQ SKTKPRNSNA DDRRLIAPVP QKEKDYSSCE
101: DEGEEEANGC PGPASSNQYQ VETKKVDCDE SFWQINKASE DSSSAVRSIC VRDMGTEMTP ISSQEPSRTA TPIRATTPVA RSPISSGSST PGRCYQTGLS
201: STESRGEAAP VGRGHGRFSS DGEESNACKM PENKNSEHAR KPNPLDTRAT AWDEAERAKY LARYKREEVK IQAWENHEKR KAEMEMKRME VKADKLKAWA
301: QEKLANKIAA TRRIAEEKRA SAEAKLNEKA ARTSERADYI RRTGRLPSSF YFKLPSLCW

Best Arabidopsis Sequence Match ( AT1G67590.1 )
(BLAST)

001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ

Arabidopsis Description

F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.