Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_17s0000g06020.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | VIT_17s0000g06020.t01 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG95278 | Soybean | nucleus | 64.58 | 64.58 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 60.89 | 60.89 |
| KRH71974 | Soybean | nucleus | 65.68 | 59.53 |
| Solyc04g015520.2.1 | Tomato | nucleus | 66.05 | 59.08 |
| KRH33097 | Soybean | nucleus | 63.84 | 58.45 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 58.3 | 58.09 |
| PGSC0003DMT400070037 | Potato | nucleus | 64.94 | 55.52 |
| Zm00001d006626_P001 | Maize | nucleus | 52.4 | 54.41 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 56.09 | 54.29 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 50.18 | 53.54 |
| KRH66963 | Soybean | nucleus | 43.54 | 52.44 |
| CDX79905 | Canola | nucleus | 52.03 | 52.42 |
| CDY48774 | Canola | nucleus | 51.66 | 51.85 |
| Bra004657.1-P | Field mustard | cytosol | 51.29 | 51.48 |
| Zm00001d021839_P001 | Maize | nucleus | 54.24 | 50.0 |
| AT2G41870.1 | Thale cress | nucleus | 50.18 | 49.63 |
| CDX72021 | Canola | nucleus | 49.82 | 49.63 |
| Zm00001d034558_P001 | Maize | nucleus | 47.6 | 49.62 |
| Os07t0569100-01 | Rice | plasma membrane | 57.56 | 49.37 |
| CDY06095 | Canola | nucleus | 52.03 | 48.12 |
| EER99573 | Sorghum | nucleus | 55.35 | 47.92 |
| Os03t0808300-01 | Rice | plasma membrane | 49.45 | 47.18 |
| Bra007335.1-P | Field mustard | nucleus | 50.92 | 47.1 |
| AT3G57540.1 | Thale cress | nucleus | 50.92 | 46.62 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 52.77 | 46.43 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 53.14 | 46.3 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 52.77 | 46.28 |
| OQU90788 | Sorghum | nucleus | 49.08 | 45.55 |
| Os07t0208600-01 | Rice | nucleus | 43.91 | 45.42 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 49.82 | 44.26 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 45.02 | 43.88 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 44.65 | 43.68 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 44.65 | 43.53 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 49.45 | 43.51 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 48.71 | 43.14 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 45.02 | 42.96 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 45.02 | 39.35 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 48.71 | 39.05 |
| VIT_01s0010g02560.t01 | Wine grape | nucleus | 23.99 | 18.11 |
| VIT_01s0010g01760.t01 | Wine grape | nucleus | 25.46 | 13.53 |
| VIT_09s0002g00360.t01 | Wine grape | nucleus | 21.4 | 12.72 |
| VIT_10s0003g04090.t01 | Wine grape | nucleus | 22.51 | 11.6 |
Protein Annotations
| ArrayExpress:VIT_08s0007g08280 | EMBL:FN595991 | EnsemblPlants:VIT_08s0007g08280.t01 | EnsemblPlantsGene:VIT_08s0007g08280 | EntrezGene:104880107 | InterPro:Remorin_C |
| ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF7 | PFAM:PF03763 | ProteinID:CCB55143 | ProteinID:CCB55143.1 |
| RefSeq:XP_010653794.1 | SEG:seg | TIGR:TC60131 | UniParc:UPI0001983DC3 | UniProt:F6HL05 | MapMan:35.1 |
Description
No Description!
Coordinates
chr8:-:21623830..21625713
Molecular Weight (calculated)
29717.7 Da
IEP (calculated)
7.946
GRAVY (calculated)
-0.842
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSIDYRAST SNGDEDHDDE EIRDIHALTP PPPPPPPQVS RGRRREAWET SSHRSSSLST TSEGASSENF TSMSREFNAL LNMAGSAIGN NGNENDGGGA
101: GNNLGRIGEE EMPEETNPLA IVPDTSLLDP VPSPRHVAAG AGGLSTTSSH SEVSVQRVKK EEVDAKISAW QTAKIAKINN RFKREDAIIN GWESEEVQKT
201: TSWMKKVERK LEEKRARALE KMQNDVAKAH RKAEERRASA EAKRGTKVAR VLELANLMRA VGRAPVKRSI F
101: GNNLGRIGEE EMPEETNPLA IVPDTSLLDP VPSPRHVAAG AGGLSTTSSH SEVSVQRVKK EEVDAKISAW QTAKIAKINN RFKREDAIIN GWESEEVQKT
201: TSWMKKVERK LEEKRARALE KMQNDVAKAH RKAEERRASA EAKRGTKVAR VLELANLMRA VGRAPVKRSI F
001: MLTLYGQERS PENSTTSTTD ASDRRDETPS SEIVVRDIHA MTTTTELTRP QQRGSGGGYL SPSRSIAFSD GTTSSGENFT TVSREFNALV IAGSSMDNNS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q93YN8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.