Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G075650.1 | |
| HORVU7Hr1G038130.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | HORVU6Hr1G075650.1 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | HORVU7Hr1G038130.1 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 94.88 | 77.99 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 94.49 | 77.92 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 94.88 | 77.49 |
| Solyc10g080240.1.1 | Tomato | cytosol | 14.57 | 74.0 |
| Zm00001d006626_P001 | Maize | nucleus | 72.05 | 70.11 |
| Zm00001d021839_P001 | Maize | nucleus | 75.59 | 65.31 |
| Os07t0569100-01 | Rice | plasma membrane | 81.1 | 65.19 |
| EER99573 | Sorghum | nucleus | 78.74 | 63.9 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 57.09 | 53.51 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 57.09 | 53.31 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 57.09 | 51.79 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 53.54 | 50.18 |
| KRG95278 | Soybean | nucleus | 51.97 | 48.71 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 51.57 | 47.12 |
| KRH71974 | Soybean | nucleus | 54.72 | 46.49 |
| KRH33097 | Soybean | nucleus | 53.54 | 45.95 |
| Solyc10g080230.1.1 | Tomato | cytosol | 28.35 | 45.57 |
| PGSC0003DMT400060978 | Potato | nucleus | 51.57 | 44.71 |
| Solyc04g015520.2.1 | Tomato | nucleus | 51.97 | 43.56 |
| CDX79905 | Canola | nucleus | 45.67 | 43.12 |
| AT2G41870.1 | Thale cress | nucleus | 46.46 | 43.07 |
| Bra004657.1-P | Field mustard | cytosol | 45.28 | 42.59 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 56.3 | 42.31 |
| CDX72021 | Canola | nucleus | 45.28 | 42.28 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 51.57 | 42.26 |
| CDY48774 | Canola | nucleus | 44.88 | 42.22 |
| PGSC0003DMT400070037 | Potato | nucleus | 52.36 | 41.96 |
| CDY06095 | Canola | nucleus | 47.24 | 40.96 |
| Bra007335.1-P | Field mustard | nucleus | 47.24 | 40.96 |
| AT3G57540.1 | Thale cress | nucleus | 47.24 | 40.54 |
| KRH66963 | Soybean | nucleus | 31.89 | 36.0 |
| HORVU4Hr1G012760.3 | Barley | nucleus | 26.77 | 19.37 |
| HORVU4Hr1G085140.6 | Barley | nucleus, plastid | 27.17 | 14.29 |
| HORVU0Hr1G040310.2 | Barley | cytosol, mitochondrion, nucleus | 27.56 | 13.62 |
| HORVU2Hr1G084090.2 | Barley | plastid | 20.47 | 12.44 |
| HORVU2Hr1G103570.7 | Barley | nucleus, plastid | 23.23 | 11.13 |
| HORVU5Hr1G009780.6 | Barley | cytosol | 17.32 | 9.09 |
Protein Annotations
| MapMan:35.1 | UniProt:A0A287HRP4 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:1900458 | EnsemblPlantsGene:HORVU2Hr1G039030 | EnsemblPlants:HORVU2Hr1G039030.1 | PFAM:PF03763 | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF39 | InterPro:Remorin_C | UniParc:UPI000B46E3A9 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr2H:-:185908988..185909913
Molecular Weight (calculated)
27782.5 Da
IEP (calculated)
6.001
GRAVY (calculated)
-0.721
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: IEEGEEEEPE FRDIHALSPP RALSLYRRSR PGSRDSWGDT APSELFPTMS REFSAMVAAA ASANASSSAA AGHGESVANE DALGRIGEEE LEETNPLAIV
101: PDSNPIPSPR RGMTPRPVTG GEVVVPSAGQ GQGDEVSVGQ VKKDEVETKI AAWQIAEVAK VNNRFKREEV VINGWEGDQV EKASAWLNKY ERKLEEKRAK
201: AMEKAQNEVA RARRKAEDKR ASAEAKRGTK VARVLELANF MRAVGRAPTK RSFF
101: PDSNPIPSPR RGMTPRPVTG GEVVVPSAGQ GQGDEVSVGQ VKKDEVETKI AAWQIAEVAK VNNRFKREEV VINGWEGDQV EKASAWLNKY ERKLEEKRAK
201: AMEKAQNEVA RARRKAEDKR ASAEAKRGTK VARVLELANF MRAVGRAPTK RSFF
001: MLTLYGQERS PENSTTSTTD ASDRRDETPS SEIVVRDIHA MTTTTELTRP QQRGSGGGYL SPSRSIAFSD GTTSSGENFT TVSREFNALV IAGSSMDNNS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q93YN8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.