Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001613 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | PGSC0003DMT400001613 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g080230.1.1 | Tomato | cytosol | 35.49 | 65.82 |
| KRG95278 | Soybean | nucleus | 56.66 | 61.25 |
| KRH71974 | Soybean | nucleus | 59.39 | 58.19 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 52.56 | 56.83 |
| KRH33097 | Soybean | nucleus | 57.0 | 56.42 |
| PGSC0003DMT400070037 | Potato | nucleus | 60.75 | 56.15 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 49.49 | 53.31 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 44.71 | 51.57 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 48.81 | 51.07 |
| Zm00001d006626_P001 | Maize | nucleus | 45.39 | 50.96 |
| KRH66963 | Soybean | nucleus | 38.91 | 50.67 |
| CDX79905 | Canola | nucleus | 45.73 | 49.81 |
| AT2G41870.1 | Thale cress | nucleus | 46.42 | 49.63 |
| Zm00001d034558_P001 | Maize | nucleus | 44.03 | 49.62 |
| CDY48774 | Canola | nucleus | 45.39 | 49.26 |
| Bra004657.1-P | Field mustard | cytosol | 45.05 | 48.89 |
| Os03t0808300-01 | Rice | plasma membrane | 46.42 | 47.89 |
| CDX72021 | Canola | nucleus | 43.69 | 47.06 |
| Zm00001d021839_P001 | Maize | nucleus | 47.1 | 46.94 |
| Os07t0569100-01 | Rice | plasma membrane | 49.49 | 45.89 |
| OQU90788 | Sorghum | nucleus | 45.39 | 45.55 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 47.44 | 45.13 |
| Bra007335.1-P | Field mustard | nucleus | 45.05 | 45.05 |
| CDY06095 | Canola | nucleus | 45.05 | 45.05 |
| EER99573 | Sorghum | nucleus | 47.78 | 44.73 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 47.44 | 44.69 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 47.1 | 44.66 |
| Os07t0208600-01 | Rice | nucleus | 39.59 | 44.27 |
| AT3G57540.1 | Thale cress | nucleus | 44.71 | 44.26 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 44.03 | 42.3 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 44.37 | 42.21 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 44.03 | 42.16 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 38.57 | 40.65 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 38.23 | 40.43 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 37.88 | 39.93 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 38.57 | 39.79 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 40.96 | 38.71 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 43.34 | 37.57 |
| PGSC0003DMT400023636 | Potato | nucleus | 14.68 | 18.38 |
| PGSC0003DMT400044982 | Potato | nucleus | 20.82 | 17.53 |
| PGSC0003DMT400031464 | Potato | nucleus | 20.82 | 11.75 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400060978 | EnsemblPlantsGene:PGSC0003DMG400023721 | EntrezGene:102588911 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF7 | PFAM:PF03763 | PGSC:PGSC0003DMG400023721 | RefSeq:XP_006351321.1 | SEG:seg | UniParc:UPI00029563D1 |
| UniProt:M1C6T6 | MapMan:35.1 | : | : | : | : |
Description
Remorin [Source:PGSC_GENE;Acc:PGSC0003DMG400023721]
Coordinates
chr10:-:57668456..57671751
Molecular Weight (calculated)
33256.6 Da
IEP (calculated)
9.819
GRAVY (calculated)
-1.008
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNNQTPNTL ANTTTNNNNN NTIIENHQHD HQEEEQIRDI HALTPPRPPS NRGRRIEAWE TSSHRSSSIS EVASSENFST MSREFNALVL AGSSVSNNHG
101: SENEVNNHIY NNNNYNNNLE SIGENNDAPI EETNPLAIVP DNYSNTLDPI IINPSSSPRR RINNNFLRNN IGEVSSVQRV KKEEVESKIS AWQNAKISKI
201: NNRFKREDVV INGWESEEVQ KATSWMKKIE RKLEEKRVKA LEKMQNDIAK AHRKAEEKKA SAEAKRGTKV AKVVEISNLM RAVGRAPPKR AFF
101: SENEVNNHIY NNNNYNNNLE SIGENNDAPI EETNPLAIVP DNYSNTLDPI IINPSSSPRR RINNNFLRNN IGEVSSVQRV KKEEVESKIS AWQNAKISKI
201: NNRFKREDVV INGWESEEVQ KATSWMKKIE RKLEEKRVKA LEKMQNDIAK AHRKAEEKKA SAEAKRGTKV AKVVEISNLM RAVGRAPPKR AFF
001: MLTLYGQERS PENSTTSTTD ASDRRDETPS SEIVVRDIHA MTTTTELTRP QQRGSGGGYL SPSRSIAFSD GTTSSGENFT TVSREFNALV IAGSSMDNNS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q93YN8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.