Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g123590.2.1 | Tomato | nucleus | 97.01 | 48.71 |
| VIT_09s0002g00360.t01 | Wine grape | nucleus | 74.36 | 38.16 |
| TraesCS2B01G363600.1 | Wheat | plastid | 58.97 | 33.41 |
| TraesCS2D01G343900.1 | Wheat | plastid | 58.97 | 33.25 |
| HORVU2Hr1G084090.2 | Barley | plastid | 58.12 | 32.54 |
| CDY68168 | Canola | nucleus | 58.12 | 32.46 |
| GSMUA_Achr10P... | Banana | nucleus | 61.97 | 32.22 |
| Bra040560.1-P | Field mustard | nucleus | 57.69 | 32.22 |
| CDY08209 | Canola | nucleus | 57.69 | 32.22 |
| AT1G53860.1 | Thale cress | nucleus | 60.68 | 32.13 |
| KRH47718 | Soybean | nucleus | 64.1 | 31.98 |
| KRH06283 | Soybean | cytosol | 64.1 | 31.71 |
| GSMUA_Achr2P07310_001 | Banana | nucleus | 61.54 | 28.92 |
| Os11t0616300-01 | Rice | nucleus | 60.68 | 28.8 |
| Zm00001d048829_P001 | Maize | plastid | 51.71 | 26.3 |
| EES10116 | Sorghum | nucleus, plastid | 55.98 | 25.64 |
| CDY36609 | Canola | cytosol | 57.27 | 20.84 |
| Bra039695.1-P | Field mustard | cytosol | 56.41 | 19.47 |
| CDY24070 | Canola | extracellular | 56.84 | 18.17 |
| PGSC0003DMT400044982 | Potato | nucleus | 26.92 | 18.1 |
| PGSC0003DMT400060978 | Potato | nucleus | 18.38 | 14.68 |
| PGSC0003DMT400031464 | Potato | nucleus | 30.34 | 13.68 |
| PGSC0003DMT400070037 | Potato | nucleus | 16.24 | 11.99 |
| Bra040561.1-P | Field mustard | cytosol | 0.85 | 0.84 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400023636 | EnsemblPlantsGene:PGSC0003DMG400009148 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF3 |
| PFAM:PF03763 | PGSC:PGSC0003DMG400009148 | UniParc:UPI000295CE43 | UniProt:M1AIQ1 | MapMan:35.2 | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009148]
Coordinates
chr3:+:61664108..61667035
Molecular Weight (calculated)
26919.9 Da
IEP (calculated)
8.417
GRAVY (calculated)
-0.951
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAIHEIKHR DIGTEMTPIG SSTTSRCHTP FKSPSPARHN TPADRSGPLA LPSSGSDSTV DIMQLQECHL AKLQFGTQFD SVTTNWSSRE EEEEDVSKSL
101: RHFEINNECR KSVSESKTRS WEEEEKNKCC LRYQREEAKI QAWINLQNAK AEAQSKKLEV KIQKMRSNLE EKLMKRMAIV HRKAEEWRTT AQLQHKDQIE
201: KVADQSRKMM LTRQNSHLSA QSSCGCLPCR NHLI
101: RHFEINNECR KSVSESKTRS WEEEEKNKCC LRYQREEAKI QAWINLQNAK AEAQSKKLEV KIQKMRSNLE EKLMKRMAIV HRKAEEWRTT AQLQHKDQIE
201: KVADQSRKMM LTRQNSHLSA QSSCGCLPCR NHLI
001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH
Arabidopsis Description
At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.