CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048829_P001	Maize	plastid	68.49	76.09
Os11t0616300-01	Rice	nucleus	69.08	71.6
TraesCS2B01G363600.1	Wheat	plastid	57.14	70.7
TraesCS2D01G343900.1	Wheat	plastid	57.14	70.36
HORVU2Hr1G084090.2	Barley	plastid	57.14	69.86
PGSC0003DMT400023636	Potato	nucleus	25.64	55.98
GSMUA_Achr10P...	Banana	nucleus	38.55	43.78
VIT_09s0002g00360.t01	Wine grape	nucleus	38.55	43.2
GSMUA_Achr2P07310_001	Banana	nucleus	39.14	40.16
Solyc03g123590.2.1	Tomato	nucleus	36.4	39.91
KRH47718	Soybean	nucleus	36.2	39.45
AT1G53860.1	Thale cress	nucleus	34.05	39.37
KRH06283	Soybean	cytosol	36.2	39.11
CDY68168	Canola	nucleus	31.51	38.42
Bra040560.1-P	Field mustard	nucleus	31.51	38.42
CDY08209	Canola	nucleus	31.51	38.42
CDY36609	Canola	cytosol	33.07	26.28
Bra039695.1-P	Field mustard	cytosol	32.88	24.78
EES05380	Sorghum	mitochondrion	15.46	23.72
OQU85140	Sorghum	cytosol	16.44	23.4
CDY24070	Canola	extracellular	32.88	22.95
KXG40319	Sorghum	nucleus	16.44	19.81
KXG23993	Sorghum	nucleus	17.22	19.13
OQU90788	Sorghum	nucleus	9.59	16.78
EES06158	Sorghum	nucleus, plastid	18.59	16.67
EER99573	Sorghum	nucleus	10.18	16.61
EES11442	Sorghum	nucleus, plastid	16.44	15.76
Bra040561.1-P	Field mustard	cytosol	1.17	2.53

Protein Annotations

EnsemblPlants:EES10116	EnsemblPlantsGene:SORBI_3005G188400	EntrezGene:8068295	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF3	PFAM:PF03763	ProteinID:EES10116	ProteinID:EES10116.1	RefSeq:XP_002451128.1	SEG:seg
UniParc:UPI0001A86B15	UniProt:C5Y6F6	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:67294094..67297654

Molecular Weight (calculated)

55053.6 Da

IEP (calculated)

9.446

GRAVY (calculated)

-0.755

Length

511 amino acids

Sequence
(BLAST)

001: MELKSSASTR RNSFHGVGAA AAAPPPPTGG GRRGGGESSV FEPTFSDPLS TLKASAEFVR SSFPMATLAR SSSSSNSHGR HHEASSSSTT TTSSSSSSAA
101: ASAQRRRGES QQQQQAVAVP ATPGRPLQFF TSPAHHQLVA PRRSVPSKWE DAEKWLRQSS ASDHGNGSGN GKAAFSRQRS SGFGHRGGAG GEDEKRAAVT
201: VRRSVDALRD AHSLALYTPP AEVLLKDKFT DNEEPSKESF VFRSSYCEPV PVAKGSAVVG AADHDDHQRR DVGTEMTPLG SSCHTPLKST SPVRHNTPAS
301: RSGPLVPYTG GGMDISELAD CHLAKLDLGV RFDAMLVNWS SKEEEEEEVS KSLRHFEATV GAGAGAGASG GPPCDKRGGG DCRWDDDDRA KSCIRYQREE
401: AKIQAWINLE SAKAEAQSRK LEVKIQKMRS NLEEKLMRRM TTVHRRAEEW RATAQAQHLQ QLRRAAADNT RRLRATSHHR HLPGSDAPSC ACFPCSNNSN
501: NVVSGNLLNY Y

Best Arabidopsis Sequence Match ( AT1G53860.1 )
(BLAST)

001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH

Arabidopsis Description

At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.