Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | EER88112 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | EES07255 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d021839_P001 | Maize | nucleus | 77.96 | 82.99 |
| Zm00001d006626_P001 | Maize | nucleus | 69.01 | 82.76 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 63.9 | 78.74 |
| Solyc10g080240.1.1 | Tomato | cytosol | 12.14 | 76.0 |
| Os07t0569100-01 | Rice | plasma membrane | 76.68 | 75.95 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 74.12 | 75.08 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 74.44 | 74.92 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 72.84 | 74.03 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 50.8 | 58.67 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 50.8 | 56.79 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 49.2 | 56.62 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 47.92 | 55.35 |
| OQU90788 | Sorghum | nucleus | 50.48 | 54.11 |
| KRG95278 | Soybean | nucleus | 45.05 | 52.03 |
| KRH71974 | Soybean | nucleus | 48.88 | 51.17 |
| KRH33097 | Soybean | nucleus | 46.96 | 49.66 |
| PGSC0003DMT400060978 | Potato | nucleus | 44.73 | 47.78 |
| Solyc04g015520.2.1 | Tomato | nucleus | 45.69 | 47.19 |
| CDX79905 | Canola | nucleus | 40.26 | 46.84 |
| AT2G41870.1 | Thale cress | nucleus | 40.26 | 45.99 |
| CDX72021 | Canola | nucleus | 39.94 | 45.96 |
| Bra004657.1-P | Field mustard | cytosol | 39.62 | 45.93 |
| CDY48774 | Canola | nucleus | 39.3 | 45.56 |
| PGSC0003DMT400070037 | Potato | nucleus | 46.01 | 45.43 |
| CDY06095 | Canola | nucleus | 40.89 | 43.69 |
| Solyc10g080230.1.1 | Tomato | cytosol | 22.04 | 43.67 |
| Bra007335.1-P | Field mustard | nucleus | 40.58 | 43.34 |
| AT3G57540.1 | Thale cress | nucleus | 40.58 | 42.91 |
| KRH66963 | Soybean | nucleus | 29.07 | 40.44 |
| EES05380 | Sorghum | mitochondrion | 21.41 | 20.12 |
| OQU85140 | Sorghum | cytosol | 22.36 | 19.5 |
| KXG40319 | Sorghum | nucleus | 23.32 | 17.22 |
| EES06158 | Sorghum | nucleus, plastid | 25.56 | 14.04 |
| KXG23993 | Sorghum | nucleus | 18.53 | 12.61 |
| EES11442 | Sorghum | nucleus, plastid | 21.09 | 12.38 |
| EES10116 | Sorghum | nucleus, plastid | 16.61 | 10.18 |
Protein Annotations
| MapMan:35.1 | EntrezGene:8083897 | UniProt:C5XBQ6 | ncoils:Coil | EnsemblPlants:EER99573 | ProteinID:EER99573 |
| ProteinID:EER99573.1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:1900458 |
| PFAM:PF03763 | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF39 | InterPro:Remorin_C | EnsemblPlantsGene:SORBI_3002G344700 | unigene:Sbi.11785 |
| UniParc:UPI0001A842AA | RefSeq:XP_002463052.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:71092245..71093981
Molecular Weight (calculated)
33614.0 Da
IEP (calculated)
6.543
GRAVY (calculated)
-0.760
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGEQTAAST SSSSGSGSGS VEHQERIVED RRLQPVGENE EEEEEFRDIH ALSPPPTPSQ PSSYRLRASW GSAAGGSRHT SIRSVGSDTA PSEPFPTMSR
101: EFSAMVAAAA NAAASANSNG DVVDRDVVDA MGRSRIGEAE EELEETNPLA IVPDSNPIPS PRRGPPTPGG ADVALMAANG HGHGHGNSNG EGGMSVGQVK
201: KEEVESKIAA WQIAEVAKVN NRFKREEVVI NGWEGDQVEK ASAWLKKYER KLEEKRAKAM EKAQNEVAKA RRKAEEKRAS AEAKRGTKVA RVLELANFMR
301: AVGRAPSTKR SFF
101: EFSAMVAAAA NAAASANSNG DVVDRDVVDA MGRSRIGEAE EELEETNPLA IVPDSNPIPS PRRGPPTPGG ADVALMAANG HGHGHGNSNG EGGMSVGQVK
201: KEEVESKIAA WQIAEVAKVN NRFKREEVVI NGWEGDQVEK ASAWLKKYER KLEEKRAKAM EKAQNEVAKA RRKAEEKRAS AEAKRGTKVA RVLELANFMR
301: AVGRAPSTKR SFF
001: MLTLYHQERS PDATSNDRDE TPETVVREVH ALTPAPEDNS RTMTATLPPP PAFRGYFSPP RSATTMSEGE NFTTISREFN ALVIAGSSME NNELMTRDVT
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
Arabidopsis Description
Putative DNA binding protein [Source:UniProtKB/TrEMBL;Acc:P93758]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.