Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72021 | Canola | nucleus | 77.7 | 84.56 |
| CDY06095 | Canola | nucleus | 81.42 | 82.25 |
| Bra007335.1-P | Field mustard | nucleus | 80.74 | 81.57 |
| Solyc10g080240.1.1 | Tomato | cytosol | 11.82 | 70.0 |
| AT2G41870.1 | Thale cress | nucleus | 62.84 | 67.88 |
| KRG95278 | Soybean | nucleus | 48.31 | 52.77 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 46.62 | 50.92 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 40.54 | 47.24 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 43.24 | 47.23 |
| KRH33097 | Soybean | nucleus | 46.62 | 46.62 |
| Zm00001d006626_P001 | Maize | nucleus | 40.54 | 45.98 |
| Zm00001d034558_P001 | Maize | nucleus | 40.2 | 45.77 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 41.89 | 45.59 |
| Solyc10g080230.1.1 | Tomato | cytosol | 24.32 | 45.57 |
| KRH71974 | Soybean | nucleus | 45.95 | 45.48 |
| PGSC0003DMT400060978 | Potato | nucleus | 44.26 | 44.71 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 41.55 | 43.93 |
| Solyc04g015520.2.1 | Tomato | nucleus | 44.93 | 43.89 |
| Os07t0208600-01 | Rice | nucleus | 37.84 | 42.75 |
| PGSC0003DMT400070037 | Potato | nucleus | 44.59 | 41.64 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 43.24 | 41.56 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 38.85 | 41.52 |
| Zm00001d021839_P001 | Maize | nucleus | 41.22 | 41.5 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 38.85 | 41.37 |
| Os03t0808300-01 | Rice | plasma membrane | 39.53 | 41.2 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 38.18 | 40.65 |
| EER99573 | Sorghum | nucleus | 42.91 | 40.58 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 42.23 | 40.45 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 42.23 | 40.19 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 38.51 | 40.14 |
| KRH66963 | Soybean | nucleus | 30.41 | 40.0 |
| OQU90788 | Sorghum | nucleus | 39.19 | 39.73 |
| Os07t0569100-01 | Rice | plasma membrane | 42.23 | 39.56 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 40.2 | 38.89 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 39.86 | 38.69 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 40.2 | 38.64 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 40.2 | 35.21 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 36.15 | 34.52 |
| AT1G67590.1 | Thale cress | nucleus | 19.93 | 17.0 |
| AT2G02170.2 | Thale cress | nucleus | 21.28 | 12.96 |
| AT1G30320.1 | Thale cress | nucleus, plastid | 19.59 | 11.39 |
| AT1G53860.1 | Thale cress | nucleus | 15.54 | 10.41 |
Protein Annotations
| MapMan:35.1 | EntrezGene:824921 | ProteinID:AEE79669.1 | ArrayExpress:AT3G57540 | EnsemblPlantsGene:AT3G57540 | RefSeq:AT3G57540 |
| TAIR:AT3G57540 | RefSeq:AT3G57540-TAIR-G | EnsemblPlants:AT3G57540.1 | TAIR:AT3G57540.1 | EMBL:AY059900 | EMBL:BT001233 |
| ncoils:Coil | GO:GO:0008150 | RefSeq:NP_567050.1 | PFAM:PF03763 | PO:PO:0000013 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF7 | UniProt:Q93YN8 | InterPro:Remorin_C |
| UniParc:UPI00000AC5BC | SEG:seg | : | : | : | : |
Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q93YN8]
Coordinates
chr3:-:21301397..21303230
Molecular Weight (calculated)
32869.0 Da
IEP (calculated)
9.717
GRAVY (calculated)
-0.940
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTLYGQERS PENSTTSTTD ASDRRDETPS SEIVVRDIHA MTTTTELTRP QQRGSGGGYL SPSRSIAFSD GTTSSGENFT TVSREFNALV IAGSSMDNNS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.