Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0747400-01 | |
| Os06t0226700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | Os02t0747400-01 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | Os06t0226700-01 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034558_P001 | Maize | nucleus | 77.82 | 85.0 |
| OQU90788 | Sorghum | nucleus | 82.04 | 79.79 |
| Solyc10g080240.1.1 | Tomato | cytosol | 13.03 | 74.0 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 74.3 | 69.18 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 74.3 | 68.95 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 74.3 | 68.51 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 69.01 | 63.23 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 73.24 | 61.54 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 52.11 | 54.61 |
| Os07t0208600-01 | Rice | nucleus | 50.0 | 54.2 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 53.17 | 53.93 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 51.41 | 53.68 |
| Os07t0569100-01 | Rice | plasma membrane | 55.63 | 50.0 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 47.18 | 49.45 |
| KRG95278 | Soybean | nucleus | 46.48 | 48.71 |
| KRH71974 | Soybean | nucleus | 49.3 | 46.82 |
| KRH33097 | Soybean | nucleus | 48.59 | 46.62 |
| PGSC0003DMT400060978 | Potato | nucleus | 47.89 | 46.42 |
| AT2G41870.1 | Thale cress | nucleus | 44.37 | 45.99 |
| Solyc04g015520.2.1 | Tomato | nucleus | 48.59 | 45.54 |
| Solyc10g080230.1.1 | Tomato | cytosol | 25.0 | 44.94 |
| CDX79905 | Canola | nucleus | 42.25 | 44.61 |
| CDY48774 | Canola | nucleus | 42.25 | 44.44 |
| Bra004657.1-P | Field mustard | cytosol | 42.25 | 44.44 |
| PGSC0003DMT400070037 | Potato | nucleus | 48.24 | 43.22 |
| CDX72021 | Canola | nucleus | 41.2 | 43.01 |
| Bra007335.1-P | Field mustard | nucleus | 43.66 | 42.32 |
| CDY06095 | Canola | nucleus | 43.31 | 41.98 |
| AT3G57540.1 | Thale cress | nucleus | 41.2 | 39.53 |
| KRH66963 | Soybean | nucleus | 29.93 | 37.78 |
| Os03t0120200-01 | Rice | nucleus | 22.18 | 14.89 |
| Os02t0602000-01 | Rice | mitochondrion | 17.61 | 14.71 |
| Os02t0116800-01 | Rice | nucleus | 24.65 | 13.73 |
| Os11t0616300-01 | Rice | nucleus | 20.42 | 11.76 |
| Os12t0613600-01 | Rice | nucleus | 17.25 | 11.48 |
| Os04t0620200-01 | Rice | nucleus, plastid | 19.37 | 10.34 |
Protein Annotations
| EMBL:AK109389 | EnsemblPlants:Os03t0808300-01 | EnsemblPlantsGene:Os03g0808300 | EntrezGene:4334517 | InterPro:Remorin_C | ncoils:Coil |
| PANTHER:PTHR31471 | PANTHER:PTHR31471:SF7 | PFAM:PF03763 | ProteinID:AAP21420.1 | ProteinID:AAS07383.1 | ProteinID:ABF99462.1 |
| ProteinID:BAF13564.1 | ProteinID:BAS86973.1 | ProteinID:EEE60149.1 | RefSeq:XP_015632264.1 | SEG:seg | UniParc:UPI00001909C7 |
| UniProt:Q84M49 | MapMan:35.1 | : | : | : | : |
Description
REMORIN 4.2Remorin, C-terminal region domain containing protein. (Os03t0808300-01)
Coordinates
chr3:-:33791008..33792733
Molecular Weight (calculated)
30999.3 Da
IEP (calculated)
5.500
GRAVY (calculated)
-0.666
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHEQHAPPP QPEPEVSLQL SAPATAADDV AAGDDEEVTV VTTYRDIHPL TPPSPTTTTT PPTRLGSAAY SWDTASSHRS VSSEEQFMTM SREFTAMVAA
101: GTTMQTGPND GNNGGDQLTS IGEDELEETN PLAIVPDSHP IATPARSRAS QLEVVPAAGP SPAPPVEARQ VKKEEVETKV SAWQTAEVAK INNRFKREEV
201: VINGWETEQV EKASAWLKKI ERKLDEQRAK ALERTQNDIA KARRKAEEKR ASAEAKRGLK LAKVLELANF MKAVGRVPTK RSFF
101: GTTMQTGPND GNNGGDQLTS IGEDELEETN PLAIVPDSHP IATPARSRAS QLEVVPAAGP SPAPPVEARQ VKKEEVETKV SAWQTAEVAK INNRFKREEV
201: VINGWETEQV EKASAWLKKI ERKLDEQRAK ALERTQNDIA KARRKAEEKR ASAEAKRGLK LAKVLELANF MKAVGRVPTK RSFF
001: MLTLYGQERS PENSTTSTTD ASDRRDETPS SEIVVRDIHA MTTTTELTRP QQRGSGGGYL SPSRSIAFSD GTTSSGENFT TVSREFNALV IAGSSMDNNS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q93YN8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.