Factsheet for Os12t0613600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041496_P001	Maize	nucleus	59.72	66.93
KXG23993	Sorghum	nucleus	71.43	66.3
TraesCS5D01G047600.3	Wheat	cytosol	66.04	62.95
TraesCS5A01G040500.1	Wheat	nucleus	64.64	61.47
TraesCS5B01G041700.1	Wheat	mitochondrion, nucleus	65.11	59.02
HORVU5Hr1G009780.6	Barley	cytosol	59.72	52.69
GSMUA_Achr10P...	Banana	nucleus	45.2	35.61
VIT_10s0003g04090.t01	Wine grape	nucleus	42.86	34.79
CDY09599	Canola	nucleus	38.64	34.66
Os03t0120200-01	Rice	nucleus	33.96	34.28
KRH58701	Soybean	nucleus	43.33	34.26
CDY26269	Canola	nucleus	38.88	34.23
KRH42599	Soybean	nucleus	43.09	34.07
Bra032380.1-P	Field mustard	nucleus	38.64	34.02
PGSC0003DMT400031464	Potato	nucleus	40.98	33.72
KRH44798	Soybean	nucleus	43.33	33.58
AT1G30320.1	Thale cress	nucleus, plastid	39.34	33.01
CDY12047	Canola	nucleus	38.41	32.8
CDX90244	Canola	nucleus	37.94	32.4
Solyc08g045640.2.1	Tomato	mitochondrion	37.47	32.39
Os02t0116800-01	Rice	nucleus	37.0	30.98
Os04t0620200-01	Rice	nucleus, plastid	38.17	30.64
Bra010777.1-P	Field mustard	nucleus	38.17	30.24
Os02t0602000-01	Rice	mitochondrion	17.1	21.47
Os07t0208600-01	Rice	nucleus	12.88	20.99
Os11t0616300-01	Rice	nucleus	21.78	18.86
Os07t0569100-01	Rice	plasma membrane	13.35	18.04
Os03t0808300-01	Rice	plasma membrane	11.48	17.25
CDY62474	Canola	nucleus	29.98	14.65
CDY62472	Canola	nucleus	29.98	14.65

Protein Annotations

EMBL:AK111002	EnsemblPlants:Os12t0613600-01	EnsemblPlantsGene:Os12g0613600	EntrezGene:4352782	InterPro:Remorin_C	ncoils:Coil
PANTHER:PTHR31471	PANTHER:PTHR31471:SF19	PFAM:PF03763	ProteinID:ABA99398.1	ProteinID:BAF30284.1	ProteinID:BAT18066.1
RefSeq:XP_015619771.1	SEG:seg	UniParc:UPI0000680C39	UniProt:Q2QM86	MapMan:35.2	:

Description

REMORIN 6.3Remorin, C-terminal region domain containing protein. (Os12t0613600-01)

Coordinates

chr12:+:25998427..26001637

Molecular Weight (calculated)

47005.5 Da

IEP (calculated)

10.836

GRAVY (calculated)

-0.878

Length

427 amino acids

Sequence
(BLAST)

001: MEYERIHKVQ MGVMSPTKLR MKLLGSHGGS IGRVDEAKKS PRASPARLDA DEDDDDHPKN SLLPQELDED YPKDQSDSSR SRSDASHGRA GNGYDSGGFE
101: FYREERPPPP PPAAVAVVGG TFFRQVPSKW NDAEKWLAGR HVVHSNPIFS KKAAAAAAAV SGRVAPEASA SSSPPSVASR QRQQKRLRVS SEAAAVSMRD
201: VGTEMTPMAS KEQSRSGTPA GAATPSLSPL CSVPTSPRGA ASASSASSER ELQIRTRREI AALGLQLGKM NIASWASKDD DDELPRASPE KRPRPRPRPH
301: SGDGGGEAKK REFEARAMAW QETHKCKLAL RFQRKEVKIQ EWESCQKAKF EAKMRHAEVQ AEQMKARAKQ KLSRRLSALS HKAEGKQARV EARRSRQAAR
401: LARQVHRIRE TGAAPSRLRR CCSWLFL

Best Arabidopsis Sequence Match ( AT1G30320.1 )
(BLAST)

001: MDYERIQKVQ KSIISPTKLR MKLMGPLNNM KREGSKSNSN SSRTSPSRLQ IPDDSEFSKN SLLASNSYSD DDVAATTTDI EVAKLPNEPV LYPTENDNQG
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8G3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.