Factsheet for TraesCS5D01G047600.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G040500.1	Wheat	nucleus	94.42	94.21
TraesCS5B01G041700.1	Wheat	mitochondrion, nucleus	95.54	90.87
HORVU5Hr1G009780.6	Barley	cytosol	84.38	78.1
Os12t0613600-01	Rice	nucleus	62.95	66.04
Zm00001d041496_P001	Maize	nucleus	55.36	65.09
KXG23993	Sorghum	nucleus	64.73	63.04
GSMUA_Achr10P...	Banana	nucleus	42.86	35.42
VIT_10s0003g04090.t01	Wine grape	nucleus	40.62	34.6
KRH58701	Soybean	nucleus	40.62	33.7
KRH42599	Soybean	nucleus	39.96	33.15
CDY09599	Canola	nucleus	35.04	32.98
PGSC0003DMT400031464	Potato	nucleus	38.17	32.95
KRH44798	Soybean	nucleus	40.18	32.67
CDY26269	Canola	nucleus	35.27	32.58
Bra032380.1-P	Field mustard	nucleus	35.04	32.37
TraesCS4D01G343800.1	Wheat	nucleus	29.91	31.75
AT1G30320.1	Thale cress	nucleus, plastid	35.49	31.24
Solyc08g045640.2.1	Tomato	mitochondrion	34.15	30.97
CDX90244	Canola	nucleus	33.93	30.4
CDY12047	Canola	nucleus	33.71	30.2
TraesCS2D01G464900.1	Wheat	nucleus, plastid	35.27	29.87
TraesCS6D01G053500.1	Wheat	nucleus	32.81	28.88
Bra010777.1-P	Field mustard	nucleus	33.71	28.01
TraesCS4D01G075000.1	Wheat	nucleus	21.88	27.76
TraesCS2D01G343900.1	Wheat	plastid	17.86	19.28
TraesCS2D01G206900.1	Wheat	cytosol, plastid	11.83	17.15
TraesCS7D01G432700.1	Wheat	nucleus	10.49	16.97
TraesCS5D01G477500.1	Wheat	nucleus	10.71	15.74
CDY62474	Canola	nucleus	26.12	13.39
CDY62472	Canola	nucleus	26.12	13.39

Protein Annotations

EnsemblPlants:TraesCS5D01G047600.3	EnsemblPlantsGene:TraesCS5D01G047600	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF19
PFAM:PF03763	SEG:seg	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5D:-:45663753..45665472

Molecular Weight (calculated)

48352.9 Da

IEP (calculated)

10.736

GRAVY (calculated)

-0.776

Length

448 amino acids

Sequence
(BLAST)

001: MAASLAAAEL STPPSSAEET KMGVMSPTKL RMKLLGMGSH PHGAANKDEA ASKSPSRLHA DDHPKNSLLP PQELDEGSSE YPKDRSDSSS RSRSSGSHGR
101: SAAHSGNGGS FEFHMEERAA VAGLGPFFRQ VPSKWNDAEK WTAGRHVVHS NPIFSKKAAA AHGHSGVGGG CVRVAPESAP PPPDAKKVSG GSALTELPRS
201: PSPSSSLSSV TGPASKQRRD TKLRTQVSAP AAAQSSSVSM RDVGTEMTPI ASQEQSRSGT PAGAATPSLS PLCSVPASPS ASERELQIRT RREIAALGLQ
301: LGKMSIASWA SKEDRIRTSP EKSAGEEDEA KKEEFEARAA AWAESKKCKF ASRYQRKEVK IQEWENCQKS KFEAKMRHAE VQADQMKARA KNSLTKRLST
401: LSHKVEGKQA RVEARRNRRA VRLARQVERI RKTGRVPSRF RCCSWFLC

Best Arabidopsis Sequence Match ( AT1G30320.1 )
(BLAST)

001: MDYERIQKVQ KSIISPTKLR MKLMGPLNNM KREGSKSNSN SSRTSPSRLQ IPDDSEFSKN SLLASNSYSD DDVAATTTDI EVAKLPNEPV LYPTENDNQG
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8G3]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.