Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G047600.3 | Wheat | cytosol | 94.21 | 94.42 |
| TraesCS5B01G041700.1 | Wheat | mitochondrion, nucleus | 94.21 | 89.81 |
| HORVU5Hr1G009780.6 | Barley | cytosol | 82.41 | 76.45 |
| Os12t0613600-01 | Rice | nucleus | 61.47 | 64.64 |
| Zm00001d041496_P001 | Maize | nucleus | 54.57 | 64.3 |
| KXG23993 | Sorghum | nucleus | 63.7 | 62.17 |
| GSMUA_Achr10P... | Banana | nucleus | 42.09 | 34.87 |
| VIT_10s0003g04090.t01 | Wine grape | nucleus | 40.09 | 34.22 |
| KRH58701 | Soybean | nucleus | 40.09 | 33.33 |
| CDY09599 | Canola | nucleus | 35.19 | 33.19 |
| CDY26269 | Canola | nucleus | 35.41 | 32.78 |
| KRH42599 | Soybean | nucleus | 39.2 | 32.59 |
| Bra032380.1-P | Field mustard | nucleus | 35.19 | 32.58 |
| PGSC0003DMT400031464 | Potato | nucleus | 37.64 | 32.56 |
| KRH44798 | Soybean | nucleus | 39.2 | 31.94 |
| TraesCS5A01G517700.1 | Wheat | nucleus | 29.4 | 31.28 |
| AT1G30320.1 | Thale cress | nucleus, plastid | 35.41 | 31.24 |
| CDX90244 | Canola | nucleus | 34.08 | 30.6 |
| Solyc08g045640.2.1 | Tomato | mitochondrion | 33.63 | 30.57 |
| CDY12047 | Canola | nucleus | 33.85 | 30.4 |
| TraesCS6A01G046400.1 | Wheat | nucleus | 32.96 | 29.13 |
| TraesCS2A01G464000.1 | Wheat | nucleus, plastid | 34.08 | 29.09 |
| Bra010777.1-P | Field mustard | nucleus | 33.85 | 28.2 |
| TraesCS4A01G238400.1 | Wheat | nucleus | 21.16 | 27.22 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 10.91 | 17.25 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 11.58 | 16.72 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 10.69 | 15.58 |
| CDY62474 | Canola | nucleus | 26.28 | 13.5 |
| CDY62472 | Canola | nucleus | 26.28 | 13.5 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G040500.1 | EnsemblPlantsGene:TraesCS5A01G040500 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF19 |
| PFAM:PF03763 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:36482557..36484306
Molecular Weight (calculated)
48532.3 Da
IEP (calculated)
10.873
GRAVY (calculated)
-0.767
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASLAGAAE QATPPPAAEG TKMGVMSPTK LRMKLLGMGS HPHPHPHGAA SKDEVASKSP SRLHADDHPK NSLLPPQELD EGSSEYPKER TDSSSRSRSS
101: GSHGRPAAHS GSFEFHMEER AAVAGLGPFF RQVPSKWNDA EKWIAGRHVV HSNPIFSKKA AAVHGHSGVG GGCVRVAPES APPPSDAKKA GGGSALTELP
201: RSPSPSSSLS SVTGPASKQR RDTKLRTQVG APAAQSSSVS MRDVGTEMTP IASQEQSRSG TPAGAATPSL SPLCSVPASP SASERELQIR TRREIAALGL
301: QLGKMSIASW ASKEDRIRAS PEKSAGEEDE ARREEFEARA AAWAESKKCK LASRYQRKEV KIQEWENCQK SKFEAKMRHA EVQADQMKAR AKNSLTKRLS
401: TLSHKVEGKQ ARVEARRNRR AVRLARQVER IRKTGRVRSR FRCCSWFLC
101: GSHGRPAAHS GSFEFHMEER AAVAGLGPFF RQVPSKWNDA EKWIAGRHVV HSNPIFSKKA AAVHGHSGVG GGCVRVAPES APPPSDAKKA GGGSALTELP
201: RSPSPSSSLS SVTGPASKQR RDTKLRTQVG APAAQSSSVS MRDVGTEMTP IASQEQSRSG TPAGAATPSL SPLCSVPASP SASERELQIR TRREIAALGL
301: QLGKMSIASW ASKEDRIRAS PEKSAGEEDE ARREEFEARA AAWAESKKCK LASRYQRKEV KIQEWENCQK SKFEAKMRHA EVQADQMKAR AKNSLTKRLS
401: TLSHKVEGKQ ARVEARRNRR AVRLARQVER IRKTGRVRSR FRCCSWFLC
001: MDYERIQKVQ KSIISPTKLR MKLMGPLNNM KREGSKSNSN SSRTSPSRLQ IPDDSEFSKN SLLASNSYSD DDVAATTTDI EVAKLPNEPV LYPTENDNQG
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8G3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.