Factsheet for TraesCS5B01G041700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G047600.3	Wheat	cytosol	90.87	95.54
TraesCS5A01G040500.1	Wheat	nucleus	89.81	94.21
HORVU5Hr1G009780.6	Barley	cytosol	79.83	77.69
Os12t0613600-01	Rice	nucleus	59.02	65.11
Zm00001d041496_P001	Maize	nucleus	52.23	64.57
KXG23993	Sorghum	nucleus	61.15	62.61
GSMUA_Achr10P...	Banana	nucleus	40.34	35.06
VIT_10s0003g04090.t01	Wine grape	nucleus	38.22	34.22
KRH58701	Soybean	nucleus	38.64	33.7
KRH42599	Soybean	nucleus	38.22	33.33
CDY09599	Canola	nucleus	33.55	33.19
KRH44798	Soybean	nucleus	38.43	32.85
CDY26269	Canola	nucleus	33.76	32.78
Bra032380.1-P	Field mustard	nucleus	33.76	32.78
Solyc08g045640.2.1	Tomato	mitochondrion	34.18	32.59
PGSC0003DMT400031464	Potato	nucleus	35.88	32.56
AT1G30320.1	Thale cress	nucleus, plastid	34.18	31.63
TraesCS4B01G349100.1	Wheat	nucleus	28.24	31.37
CDX90244	Canola	nucleus	32.48	30.6
CDY12047	Canola	nucleus	32.48	30.6
TraesCS2B01G485700.1	Wheat	nucleus, plastid	33.97	30.3
TraesCS6B01G062500.1	Wheat	nucleus	31.63	29.33
Bra010777.1-P	Field mustard	nucleus	32.27	28.2
TraesCS4B01G076500.1	Wheat	nucleus	21.02	27.97
TraesCS2B01G363600.1	Wheat	plastid	17.41	19.85
TraesCS7B01G342300.1	Wheat	nucleus	10.62	17.99
TraesCS2B01G226600.1	Wheat	cytosol, nucleus, plastid	11.25	17.21
TraesCS5B01G476700.1	Wheat	nucleus	10.4	16.01
CDY62474	Canola	nucleus	25.27	13.62
CDY62472	Canola	nucleus	25.27	13.62

Protein Annotations

EnsemblPlants:TraesCS5B01G041700.1	EnsemblPlantsGene:TraesCS5B01G041700	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF19
PFAM:PF03763	SEG:seg	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5B:-:45843665..45845476

Molecular Weight (calculated)

50894.9 Da

IEP (calculated)

10.710

GRAVY (calculated)

-0.743

Length

471 amino acids

Sequence
(BLAST)

001: MLVGRGSLCS LCSHHRTPMA ASLAAAEQST PPSSAEETKM GVMSPTKLRM KLLGMGSHPH PHPHGAASKD EAASKSPSRL HADDHPKNSL LPQELDEGSS
101: EYHKDRSDSS SRSRSSGSHG RSAAHSGNGG SFEFHMEERA AVAGLGPFFR QVPSKWNDAE KWIAGRHVVH SNPIFSKKAA ASVHGHSGVG GGCVRVVPES
201: AAPQSETKKT SGGSALTELP RSPSPSSSSL ASVTGPASKQ RRDTKLRTQV GAPAVAQSSS VSMRDVGTEM TPIASQEQSR SGTPAGAATP SLSPLCSVPA
301: SPSASERELQ IRTRREIAAL GLQLGKMSIA SWASKEDRIR TSPDKSTGEE DEASKEEFEA RAAAWAESKK CKLASRYQRK EVKIQEWENC QKSKFEAKMR
401: HAEVQADQMK ARAKNSLTKR LSTLSHKVEG KQARVEARRN RRAVRLARQV ERIRKTGRVP SRFRCCSWFL C

Best Arabidopsis Sequence Match ( AT1G30320.1 )
(BLAST)

001: MDYERIQKVQ KSIISPTKLR MKLMGPLNNM KREGSKSNSN SSRTSPSRLQ IPDDSEFSKN SLLASNSYSD DDVAATTTDI EVAKLPNEPV LYPTENDNQG
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8G3]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.