Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g045640.2.1 | Tomato | mitochondrion | 71.87 | 75.51 |
| VIT_10s0003g04090.t01 | Wine grape | nucleus | 68.98 | 68.06 |
| KRH58701 | Soybean | nucleus | 63.01 | 60.56 |
| KRH42599 | Soybean | nucleus | 62.43 | 60.0 |
| KRH44798 | Soybean | nucleus | 61.66 | 58.08 |
| CDY09599 | Canola | nucleus | 51.06 | 55.67 |
| AT1G30320.1 | Thale cress | nucleus, plastid | 53.56 | 54.62 |
| CDY26269 | Canola | nucleus | 50.48 | 54.02 |
| Bra032380.1-P | Field mustard | nucleus | 50.1 | 53.61 |
| CDY12047 | Canola | nucleus | 51.06 | 53.0 |
| CDX90244 | Canola | nucleus | 50.1 | 52.0 |
| Bra010777.1-P | Field mustard | nucleus | 49.71 | 47.87 |
| GSMUA_Achr10P... | Banana | nucleus | 45.66 | 43.73 |
| GSMUA_Achr5P26590_001 | Banana | nucleus | 40.85 | 41.65 |
| Os12t0613600-01 | Rice | nucleus | 33.72 | 40.98 |
| Zm00001d041496_P001 | Maize | nucleus | 29.87 | 40.68 |
| Os04t0620200-01 | Rice | nucleus, plastid | 40.85 | 39.85 |
| EES11442 | Sorghum | nucleus, plastid | 40.08 | 39.02 |
| TraesCS2A01G464000.1 | Wheat | nucleus, plastid | 39.11 | 38.59 |
| KXG23993 | Sorghum | nucleus | 33.91 | 38.26 |
| TraesCS2B01G485700.1 | Wheat | nucleus, plastid | 38.92 | 38.26 |
| PGSC0003DMT400044982 | Potato | nucleus | 25.63 | 38.22 |
| TraesCS2D01G464900.1 | Wheat | nucleus, plastid | 38.92 | 38.19 |
| TraesCS5D01G047600.3 | Wheat | cytosol | 32.95 | 38.17 |
| TraesCS5A01G040500.1 | Wheat | nucleus | 32.56 | 37.64 |
| HORVU2Hr1G103570.7 | Barley | nucleus, plastid | 37.38 | 36.6 |
| Zm00001d002274_P001 | Maize | nucleus, plastid | 39.69 | 36.46 |
| TraesCS5B01G041700.1 | Wheat | mitochondrion, nucleus | 32.56 | 35.88 |
| HORVU5Hr1G009780.6 | Barley | cytosol | 28.9 | 30.99 |
| PGSC0003DMT400023636 | Potato | nucleus | 13.68 | 30.34 |
| PGSC0003DMT400060978 | Potato | nucleus | 11.75 | 20.82 |
| PGSC0003DMT400070037 | Potato | nucleus | 10.79 | 17.67 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400031464 | EnsemblPlantsGene:PGSC0003DMG400012066 | EntrezGene:102605118 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF17 | PFAM:PF03763 |
| PGSC:PGSC0003DMG400012066 | RefSeq:XP_006357732.1 | SEG:seg | UniParc:UPI00029694EB | UniProt:M1AVQ2 | MapMan:35.2 |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012066]
Coordinates
chr8:+:30146473..30150466
Molecular Weight (calculated)
58001.8 Da
IEP (calculated)
8.314
GRAVY (calculated)
-0.990
Length
519 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYERIHKVQ SGIISPSKLR MKLIGPHHQK KKKEGSNSHS STTSPARLPD DSEFVNNSLL AAQSGGDFEE EYCNLEATEN KLPGNSRQGD EDLNSCLPKV
101: NGDSARVKRQ QSSKMDGGNS SSVHPVKGCE DENFDYDSTS SFEFHKGERS MHHHSITSRS FSRPMSSKWN DAEKWIMNRQ NMQPNHSKKV QLQNQPYRGP
201: ATSMVRVAPE STSYESKLAV KKVDFCQPAC QLVPEKFDFD HPGSQSQGNG PNAVSLDLCP ESKDLTEVVS GDSCLTEDRT VGPAIRSVSM RDMGTEMTPI
301: PSQEPSRTAT PVGATTPLRS PTSSIPSTPR RGEPAPTPTE NYIDNASQTS TENNKRELSE EELKMKTRKE IVALGVQLGK MNIAAWASKD EKDKSKADAV
401: DAERMEYAKR AAAWEEVEKS KDTARYKREE IKIQAWESQH KAKLEAELRK IEAQVEQMRA QAQAKMVKKI AMARQKSEEK RAAAEARRNQ QAEKTTEQVQ
501: YIRQTGRLPS SSFTCCGWL
101: NGDSARVKRQ QSSKMDGGNS SSVHPVKGCE DENFDYDSTS SFEFHKGERS MHHHSITSRS FSRPMSSKWN DAEKWIMNRQ NMQPNHSKKV QLQNQPYRGP
201: ATSMVRVAPE STSYESKLAV KKVDFCQPAC QLVPEKFDFD HPGSQSQGNG PNAVSLDLCP ESKDLTEVVS GDSCLTEDRT VGPAIRSVSM RDMGTEMTPI
301: PSQEPSRTAT PVGATTPLRS PTSSIPSTPR RGEPAPTPTE NYIDNASQTS TENNKRELSE EELKMKTRKE IVALGVQLGK MNIAAWASKD EKDKSKADAV
401: DAERMEYAKR AAAWEEVEKS KDTARYKREE IKIQAWESQH KAKLEAELRK IEAQVEQMRA QAQAKMVKKI AMARQKSEEK RAAAEARRNQ QAEKTTEQVQ
501: YIRQTGRLPS SSFTCCGWL
001: MDYERIQKVQ KSIISPTKLR MKLMGPLNNM KREGSKSNSN SSRTSPSRLQ IPDDSEFSKN SLLASNSYSD DDVAATTTDI EVAKLPNEPV LYPTENDNQG
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8G3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.