Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26269 | Canola | nucleus | 98.53 | 96.7 |
| Bra032380.1-P | Field mustard | nucleus | 98.11 | 96.29 |
| CDX90244 | Canola | nucleus | 83.61 | 79.6 |
| CDY12047 | Canola | nucleus | 83.19 | 79.2 |
| AT1G30320.1 | Thale cress | nucleus, plastid | 81.3 | 76.03 |
| VIT_10s0003g04090.t01 | Wine grape | nucleus | 59.87 | 54.18 |
| KRH42599 | Soybean | nucleus | 58.82 | 51.85 |
| KRH58701 | Soybean | nucleus | 58.61 | 51.67 |
| PGSC0003DMT400031464 | Potato | nucleus | 55.67 | 51.06 |
| KRH44798 | Soybean | nucleus | 58.61 | 50.64 |
| Solyc08g045640.2.1 | Tomato | mitochondrion | 47.9 | 46.15 |
| CDY09386 | Canola | nucleus | 32.77 | 38.9 |
| Os12t0613600-01 | Rice | nucleus | 34.66 | 38.64 |
| Zm00001d041496_P001 | Maize | nucleus | 30.67 | 38.32 |
| CDY15819 | Canola | nucleus | 35.5 | 38.24 |
| GSMUA_Achr5P26590_001 | Banana | nucleus | 40.76 | 38.11 |
| Os04t0620200-01 | Rice | nucleus, plastid | 42.44 | 37.97 |
| CDY17607 | Canola | nucleus | 35.08 | 37.61 |
| CDY03066 | Canola | nucleus | 31.51 | 37.22 |
| EES11442 | Sorghum | nucleus, plastid | 41.18 | 36.77 |
| KXG23993 | Sorghum | nucleus | 35.5 | 36.74 |
| GSMUA_Achr10P... | Banana | nucleus | 40.97 | 35.98 |
| TraesCS2B01G485700.1 | Wheat | nucleus, plastid | 39.5 | 35.61 |
| TraesCS2A01G464000.1 | Wheat | nucleus, plastid | 39.08 | 35.36 |
| TraesCS2D01G464900.1 | Wheat | nucleus, plastid | 39.29 | 35.35 |
| TraesCS5A01G040500.1 | Wheat | nucleus | 33.19 | 35.19 |
| TraesCS5D01G047600.3 | Wheat | cytosol | 32.98 | 35.04 |
| Zm00001d002274_P001 | Maize | nucleus, plastid | 41.39 | 34.87 |
| CDY32543 | Canola | nucleus | 25.63 | 34.56 |
| HORVU2Hr1G103570.7 | Barley | nucleus, plastid | 38.03 | 34.15 |
| CDY12657 | Canola | cytosol | 25.21 | 33.99 |
| CDY01823 | Canola | nucleus | 25.21 | 33.9 |
| TraesCS5B01G041700.1 | Wheat | mitochondrion, nucleus | 33.19 | 33.55 |
| CDX96080 | Canola | nucleus | 24.79 | 33.24 |
| HORVU5Hr1G009780.6 | Barley | cytosol | 30.67 | 30.17 |
| CDY62474 | Canola | nucleus | 50.84 | 27.69 |
| CDY62472 | Canola | nucleus | 50.84 | 27.69 |
| CDY08209 | Canola | nucleus | 19.33 | 21.96 |
| CDY68168 | Canola | nucleus | 19.33 | 21.96 |
| CDX79905 | Canola | nucleus | 11.13 | 19.7 |
| CDY48774 | Canola | nucleus | 10.92 | 19.26 |
| CDX72021 | Canola | nucleus | 10.71 | 18.75 |
| CDY06095 | Canola | nucleus | 10.71 | 17.41 |
| CDY36609 | Canola | cytosol | 20.8 | 15.4 |
| CDY24070 | Canola | extracellular | 21.22 | 13.8 |
Protein Annotations
| EnsemblPlants:CDY09599 | EnsemblPlantsGene:GSBRNA2T00031228001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF17 |
| PFAM:PF03763 | ProteinID:CDY09599 | ProteinID:CDY09599.1 | SEG:seg | UniParc:UPI0004EF2E48 | UniProt:A0A078F9C6 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC05g23200DBnaC05g23200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9C6]
Coordinates
chrLK031997:-:852951..856972
Molecular Weight (calculated)
53366.3 Da
IEP (calculated)
8.567
GRAVY (calculated)
-1.044
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYERIEKVQ KSMISPTKLR MKLMGPHNNK KKEGSSNNSS RTSPVRLQVS DDTEFSKNSL LASKSDSDED DHDIEVAKLP NAPVLDLTES SNQGGMRETD
101: QPRPQQLKKA DLSITLRPQE DENLDYDSNA SSSSFEFHGG VRGERSTQSH ASRAYPSRQV PSKWSDAEKW ILSRQNMMMR KNGQGNRMPV RVVPDNTGYE
201: HTKSRMDPCQ SSQAEGFEKF PNLVPTAPHP ILTKASSHDN TTAGPAIRSV CMRDMGTEMT PIPSQEPSRS VTPVDATTPL RSPTSSLPST PRGGKQVESS
301: VSQDPSKNTR RDLSEEEMKA KTRREIVALG VQLGKTNIAA WASKEEEENN NVDAEETQRV EFDKRASAWE EAEKSKHNAR YKREEIRIQA WESQEKAKLE
401: AEMRRIEAKV QQMKAEAEAK IVKKIAMAKQ RSEEKRAAAE ARKARDAEKA AAEAEYIRET GQIPASSYKI CCGWLS
101: QPRPQQLKKA DLSITLRPQE DENLDYDSNA SSSSFEFHGG VRGERSTQSH ASRAYPSRQV PSKWSDAEKW ILSRQNMMMR KNGQGNRMPV RVVPDNTGYE
201: HTKSRMDPCQ SSQAEGFEKF PNLVPTAPHP ILTKASSHDN TTAGPAIRSV CMRDMGTEMT PIPSQEPSRS VTPVDATTPL RSPTSSLPST PRGGKQVESS
301: VSQDPSKNTR RDLSEEEMKA KTRREIVALG VQLGKTNIAA WASKEEEENN NVDAEETQRV EFDKRASAWE EAEKSKHNAR YKREEIRIQA WESQEKAKLE
401: AEMRRIEAKV QQMKAEAEAK IVKKIAMAKQ RSEEKRAAAE ARKARDAEKA AAEAEYIRET GQIPASSYKI CCGWLS
001: MDYERIQKVQ KSIISPTKLR MKLMGPLNNM KREGSKSNSN SSRTSPSRLQ IPDDSEFSKN SLLASNSYSD DDVAATTTDI EVAKLPNEPV LYPTENDNQG
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8G3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.