Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96080 | Canola | nucleus | 98.02 | 97.75 |
| Bra004237.1-P | Field mustard | nucleus | 87.57 | 97.48 |
| CDY12657 | Canola | cytosol | 88.42 | 88.67 |
| CDY32543 | Canola | nucleus | 87.01 | 87.25 |
| AT1G67590.1 | Thale cress | nucleus | 83.9 | 85.59 |
| PGSC0003DMT400044982 | Potato | nucleus | 56.78 | 57.76 |
| Solyc05g014710.2.1 | Tomato | nucleus | 56.78 | 57.43 |
| VIT_01s0010g02560.t01 | Wine grape | nucleus | 58.19 | 57.38 |
| GSMUA_Achr9P07790_001 | Banana | nucleus | 50.0 | 56.37 |
| KRH58742 | Soybean | nucleus | 55.37 | 53.41 |
| KRH42640 | Soybean | nucleus | 54.8 | 52.86 |
| GSMUA_Achr3P17060_001 | Banana | nucleus | 51.13 | 52.46 |
| TraesCS4A01G238400.1 | Wheat | nucleus | 51.41 | 52.15 |
| HORVU4Hr1G012760.3 | Barley | nucleus | 51.41 | 51.85 |
| TraesCS4D01G075000.1 | Wheat | nucleus | 51.41 | 51.56 |
| TraesCS4B01G076500.1 | Wheat | nucleus | 51.13 | 51.13 |
| Zm00001d050790_P003 | Maize | nucleus | 47.18 | 49.26 |
| OQU85140 | Sorghum | cytosol | 48.02 | 47.35 |
| Zm00001d051005_P001 | Maize | mitochondrion, nucleus | 35.03 | 39.87 |
| EES05380 | Sorghum | mitochondrion | 35.31 | 37.54 |
| CDY09386 | Canola | nucleus | 37.29 | 32.92 |
| CDY03066 | Canola | nucleus | 35.31 | 31.02 |
| Os02t0602000-01 | Rice | mitochondrion | 29.38 | 30.59 |
| CDY15819 | Canola | nucleus | 37.29 | 29.86 |
| CDY17607 | Canola | nucleus | 36.72 | 29.28 |
| CDY09599 | Canola | nucleus | 33.9 | 25.21 |
| CDY26269 | Canola | nucleus | 34.18 | 24.95 |
| CDX90244 | Canola | nucleus | 33.33 | 23.6 |
| CDX79905 | Canola | nucleus | 17.8 | 23.42 |
| CDY12047 | Canola | nucleus | 33.05 | 23.4 |
| CDY48774 | Canola | nucleus | 17.51 | 22.96 |
| CDX72021 | Canola | nucleus | 16.67 | 21.69 |
| CDY06095 | Canola | nucleus | 16.95 | 20.48 |
| CDY68168 | Canola | nucleus | 22.88 | 19.33 |
| CDY08209 | Canola | nucleus | 22.6 | 19.09 |
| CDY36609 | Canola | cytosol | 24.86 | 13.69 |
| CDY24070 | Canola | extracellular | 25.14 | 12.16 |
| CDY62474 | Canola | nucleus | 22.03 | 8.92 |
| CDY62472 | Canola | nucleus | 22.03 | 8.92 |
Protein Annotations
| EnsemblPlants:CDY01823 | EnsemblPlantsGene:GSBRNA2T00112982001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF15 |
| PFAM:PF03763 | ProteinID:CDY01823 | ProteinID:CDY01823.1 | SEG:seg | UniParc:UPI0004EDD607 | MapMan:35.2 |
Description
BnaC06g28630D
Coordinates
chrLK031929:-:564383..565984
Molecular Weight (calculated)
39324.9 Da
IEP (calculated)
9.535
GRAVY (calculated)
-0.994
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSQGVEDNK GWLGPATPEI SNGNGNTGFE FQKGANRTPN HHRSTIGKPA PSKWDDAQKW LSGVGLARGG GEKNHHSSRN CKPRNSNADD LRLIASASQR
101: EREGEDQYVE YDEEDGAAGR PEVETKNVDC GEPAGGSVWR KESIINPTAV IRSVCVRDMG TEMTPIGSQE PSRTGTPVRA TTPVGRSPVT SPVRASHGVE
201: AVRTAETVVA EGRSVASNDN EKIRYGENNN DNKAMNAMEA RAMAWDEAER AKFMARYKRE EVKIQAWENH EKRKAEMEMK KMEVKAERMK ARAEEKLANK
301: LAATKRIAEE RRANAEAKLN EKAVRTSERA DYIRRSGHLP SSFSFKIPSF SLCW
101: EREGEDQYVE YDEEDGAAGR PEVETKNVDC GEPAGGSVWR KESIINPTAV IRSVCVRDMG TEMTPIGSQE PSRTGTPVRA TTPVGRSPVT SPVRASHGVE
201: AVRTAETVVA EGRSVASNDN EKIRYGENNN DNKAMNAMEA RAMAWDEAER AKFMARYKRE EVKIQAWENH EKRKAEMEMK KMEVKAERMK ARAEEKLANK
301: LAATKRIAEE RRANAEAKLN EKAVRTSERA DYIRRSGHLP SSFSFKIPSF SLCW
001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
Arabidopsis Description
F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.