Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | CDY36943 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72021 | Canola | nucleus | 91.81 | 98.9 |
| Bra007335.1-P | Field mustard | nucleus | 98.63 | 98.63 |
| AT3G57540.1 | Thale cress | nucleus | 82.25 | 81.42 |
| Solyc10g080240.1.1 | Tomato | cytosol | 12.63 | 74.0 |
| CDX79905 | Canola | nucleus | 63.14 | 68.77 |
| CDY48774 | Canola | nucleus | 62.8 | 68.15 |
| KRG95278 | Soybean | nucleus | 48.46 | 52.4 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 48.12 | 52.03 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 44.71 | 48.34 |
| KRH33097 | Soybean | nucleus | 48.46 | 47.97 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 40.96 | 47.24 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 43.69 | 47.06 |
| KRH71974 | Soybean | nucleus | 47.78 | 46.82 |
| Zm00001d006626_P001 | Maize | nucleus | 41.64 | 46.74 |
| Solyc10g080230.1.1 | Tomato | cytosol | 24.91 | 46.2 |
| Zm00001d034558_P001 | Maize | nucleus | 40.96 | 46.15 |
| PGSC0003DMT400060978 | Potato | nucleus | 45.05 | 45.05 |
| Solyc04g015520.2.1 | Tomato | nucleus | 46.42 | 44.88 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 42.32 | 44.29 |
| Os03t0808300-01 | Rice | plasma membrane | 41.98 | 43.31 |
| Os07t0208600-01 | Rice | nucleus | 38.23 | 42.75 |
| PGSC0003DMT400070037 | Potato | nucleus | 46.08 | 42.59 |
| Zm00001d021839_P001 | Maize | nucleus | 41.98 | 41.84 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 43.69 | 41.56 |
| OQU90788 | Sorghum | nucleus | 40.96 | 41.1 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 38.91 | 41.01 |
| EER99573 | Sorghum | nucleus | 43.69 | 40.89 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 38.57 | 40.79 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 42.66 | 40.45 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 41.98 | 40.33 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 38.23 | 40.29 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 41.98 | 40.2 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 42.66 | 40.19 |
| Os07t0569100-01 | Rice | plasma membrane | 43.34 | 40.19 |
| KRH66963 | Soybean | nucleus | 30.72 | 40.0 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 41.98 | 39.94 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 38.23 | 39.44 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 42.32 | 36.69 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 38.57 | 36.45 |
| CDY12657 | Canola | cytosol | 20.48 | 17.0 |
| CDY01823 | Canola | nucleus | 20.48 | 16.95 |
| CDY32543 | Canola | nucleus | 20.14 | 16.71 |
| CDX96080 | Canola | nucleus | 20.14 | 16.62 |
| CDY09386 | Canola | nucleus | 20.14 | 14.71 |
| CDY03066 | Canola | nucleus | 20.14 | 14.64 |
| CDY17607 | Canola | nucleus | 21.84 | 14.41 |
| CDY15819 | Canola | nucleus | 21.16 | 14.03 |
| CDY68168 | Canola | nucleus | 16.04 | 11.22 |
| CDY12047 | Canola | nucleus | 19.11 | 11.2 |
| CDX90244 | Canola | nucleus | 18.77 | 11.0 |
| CDY08209 | Canola | nucleus | 15.7 | 10.98 |
| CDY09599 | Canola | nucleus | 17.41 | 10.71 |
| CDY26269 | Canola | nucleus | 17.41 | 10.52 |
| CDY36609 | Canola | cytosol | 15.36 | 7.0 |
| CDY24070 | Canola | extracellular | 16.04 | 6.42 |
| CDY62474 | Canola | nucleus | 12.97 | 4.35 |
| CDY62472 | Canola | nucleus | 12.97 | 4.35 |
Protein Annotations
| EnsemblPlants:CDY06095 | EnsemblPlantsGene:GSBRNA2T00121968001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF7 |
| PFAM:PF03763 | ProteinID:CDY06095 | ProteinID:CDY06095.1 | SEG:seg | UniParc:UPI0004EDE0C5 | MapMan:35.1 |
Description
BnaA09g36850D
Coordinates
chrLK031967:+:738970..740577
Molecular Weight (calculated)
32504.6 Da
IEP (calculated)
8.926
GRAVY (calculated)
-0.904
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTLYSQDSS STEITTTTTD ASDSRDETPP SETVVRDIHA MTTTELPRPQ QRGGHLSPTR SVNFSDGASS AGENFTTVSR EFNALVIAGS SMDNNNNSNG
101: NNQSISHRDV INELTRISED EDGGGGDQHH QVPEEDTNPW AIVPDGYDNR AGSENIVTTT SSSGQNRMVT AASVQRVKRD EVEAKITAWQ TAKLAKINNR
201: FKRQEAFING WLNEQVHKAN SWMKKIERKL EERRAKAMEK TQNKVAKAQR KAEERRATAE AKRGTEVARV LEVSNLMRAV GRPPAKRSFF SIS
101: NNQSISHRDV INELTRISED EDGGGGDQHH QVPEEDTNPW AIVPDGYDNR AGSENIVTTT SSSGQNRMVT AASVQRVKRD EVEAKITAWQ TAKLAKINNR
201: FKRQEAFING WLNEQVHKAN SWMKKIERKL EERRAKAMEK TQNKVAKAQR KAEERRATAE AKRGTEVARV LEVSNLMRAV GRPPAKRSFF SIS
001: MLTLYGQERS PENSTTSTTD ASDRRDETPS SEIVVRDIHA MTTTTELTRP QQRGSGGGYL SPSRSIAFSD GTTSSGENFT TVSREFNALV IAGSSMDNNS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q93YN8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.