Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY01823 Canola nucleus 97.75 98.02
Bra004237.1-P Field mustard nucleus 87.61 97.8
CDY12657 Canola cytosol 88.17 88.67
CDY32543 Canola nucleus 86.76 87.25
AT1G67590.1 Thale cress nucleus 83.94 85.88
PGSC0003DMT400044982 Potato nucleus 56.62 57.76
Solyc05g014710.2.1 Tomato nucleus 56.62 57.43
VIT_01s0010g02560.t01 Wine grape nucleus 58.03 57.38
GSMUA_Achr9P07790_001 Banana nucleus 49.58 56.05
KRH58742 Soybean nucleus 54.93 53.13
KRH42640 Soybean nucleus 54.37 52.59
GSMUA_Achr3P17060_001 Banana nucleus 50.7 52.17
TraesCS4A01G238400.1 Wheat nucleus 51.27 52.15
HORVU4Hr1G012760.3 Barley nucleus 50.99 51.57
TraesCS4D01G075000.1 Wheat nucleus 50.99 51.27
TraesCS4B01G076500.1 Wheat nucleus 50.7 50.85
Zm00001d050790_P003 Maize nucleus 46.76 48.97
OQU85140 Sorghum cytosol 47.61 47.08
Zm00001d051005_P001 Maize mitochondrion, nucleus 34.65 39.55
EES05380 Sorghum mitochondrion 34.93 37.24
CDY09386 Canola nucleus 36.9 32.67
CDY03066 Canola nucleus 34.93 30.77
Os02t0602000-01 Rice mitochondrion 29.01 30.29
CDY15819 Canola nucleus 36.9 29.64
CDY17607 Canola nucleus 36.34 29.05
CDY09599 Canola nucleus 33.24 24.79
CDY26269 Canola nucleus 33.52 24.54
CDX79905 Canola nucleus 17.46 23.05
CDX90244 Canola nucleus 32.39 23.0
CDY12047 Canola nucleus 32.39 23.0
CDY48774 Canola nucleus 17.18 22.59
CDX72021 Canola nucleus 16.34 21.32
CDY06095 Canola nucleus 16.62 20.14
CDY68168 Canola nucleus 22.82 19.33
CDY08209 Canola nucleus 22.54 19.09
CDY36609 Canola cytosol 24.79 13.69
CDY24070 Canola extracellular 25.07 12.16
CDY62474 Canola nucleus 21.97 8.92
CDY62472 Canola nucleus 21.97 8.92
Protein Annotations
EnsemblPlants:CDX96080EnsemblPlantsGene:GSBRNA2T00102124001InterPro:Remorin_Cncoils:CoilPANTHER:PTHR31471PANTHER:PTHR31471:SF15
PFAM:PF03763ProteinID:CDX96080ProteinID:CDX96080.1SEG:segUniParc:UPI0004EE6357MapMan:35.2
Description
BnaA07g26510D
Coordinates
chrLK031892:+:942705..944316
Molecular Weight (calculated)
39434.9 Da
IEP (calculated)
9.681
GRAVY (calculated)
-1.018
Length
355 amino acids
Sequence
(BLAST)
001: MRSQGVEDNK GWLGPATPEI SNGNGNTGFE FQKGANRTPN HQHRSTIGKP APSKWDDAQK WLSGVGLARG GGGEKNHHSS RNGKPRNSNA DDLRLIASAS
101: QREREGEDQY VEYDEEDGAA GRPEVETKNV DCGEPAGGSV WRKESIINPT AVIRSVCVRD MGTEMTPIGS QEPSRTGTPV RATTPVGRSP VTSPVRASHS
201: VEAVRTETVV TEGRSVASDN NEKIRYGENN NDNKAMNAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEL KKMEVKAERM KARAEEKLAN
301: KLAATKRIAE ERRANAEAKL NEKAVRTSER ADYIRRSGHL PSSFSFKIPS FSLCW
Best Arabidopsis Sequence Match ( AT1G67590.1 )
(BLAST)
001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
Arabidopsis Description
F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.