Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY01823 | Canola | nucleus | 97.75 | 98.02 |
Bra004237.1-P | Field mustard | nucleus | 87.61 | 97.8 |
CDY12657 | Canola | cytosol | 88.17 | 88.67 |
CDY32543 | Canola | nucleus | 86.76 | 87.25 |
AT1G67590.1 | Thale cress | nucleus | 83.94 | 85.88 |
PGSC0003DMT400044982 | Potato | nucleus | 56.62 | 57.76 |
Solyc05g014710.2.1 | Tomato | nucleus | 56.62 | 57.43 |
VIT_01s0010g02560.t01 | Wine grape | nucleus | 58.03 | 57.38 |
GSMUA_Achr9P07790_001 | Banana | nucleus | 49.58 | 56.05 |
KRH58742 | Soybean | nucleus | 54.93 | 53.13 |
KRH42640 | Soybean | nucleus | 54.37 | 52.59 |
GSMUA_Achr3P17060_001 | Banana | nucleus | 50.7 | 52.17 |
TraesCS4A01G238400.1 | Wheat | nucleus | 51.27 | 52.15 |
HORVU4Hr1G012760.3 | Barley | nucleus | 50.99 | 51.57 |
TraesCS4D01G075000.1 | Wheat | nucleus | 50.99 | 51.27 |
TraesCS4B01G076500.1 | Wheat | nucleus | 50.7 | 50.85 |
Zm00001d050790_P003 | Maize | nucleus | 46.76 | 48.97 |
OQU85140 | Sorghum | cytosol | 47.61 | 47.08 |
Zm00001d051005_P001 | Maize | mitochondrion, nucleus | 34.65 | 39.55 |
EES05380 | Sorghum | mitochondrion | 34.93 | 37.24 |
CDY09386 | Canola | nucleus | 36.9 | 32.67 |
CDY03066 | Canola | nucleus | 34.93 | 30.77 |
Os02t0602000-01 | Rice | mitochondrion | 29.01 | 30.29 |
CDY15819 | Canola | nucleus | 36.9 | 29.64 |
CDY17607 | Canola | nucleus | 36.34 | 29.05 |
CDY09599 | Canola | nucleus | 33.24 | 24.79 |
CDY26269 | Canola | nucleus | 33.52 | 24.54 |
CDX79905 | Canola | nucleus | 17.46 | 23.05 |
CDX90244 | Canola | nucleus | 32.39 | 23.0 |
CDY12047 | Canola | nucleus | 32.39 | 23.0 |
CDY48774 | Canola | nucleus | 17.18 | 22.59 |
CDX72021 | Canola | nucleus | 16.34 | 21.32 |
CDY06095 | Canola | nucleus | 16.62 | 20.14 |
CDY68168 | Canola | nucleus | 22.82 | 19.33 |
CDY08209 | Canola | nucleus | 22.54 | 19.09 |
CDY36609 | Canola | cytosol | 24.79 | 13.69 |
CDY24070 | Canola | extracellular | 25.07 | 12.16 |
CDY62474 | Canola | nucleus | 21.97 | 8.92 |
CDY62472 | Canola | nucleus | 21.97 | 8.92 |
Protein Annotations
EnsemblPlants:CDX96080 | EnsemblPlantsGene:GSBRNA2T00102124001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF15 |
PFAM:PF03763 | ProteinID:CDX96080 | ProteinID:CDX96080.1 | SEG:seg | UniParc:UPI0004EE6357 | MapMan:35.2 |
Description
BnaA07g26510D
Coordinates
chrLK031892:+:942705..944316
Molecular Weight (calculated)
39434.9 Da
IEP (calculated)
9.681
GRAVY (calculated)
-1.018
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSQGVEDNK GWLGPATPEI SNGNGNTGFE FQKGANRTPN HQHRSTIGKP APSKWDDAQK WLSGVGLARG GGGEKNHHSS RNGKPRNSNA DDLRLIASAS
101: QREREGEDQY VEYDEEDGAA GRPEVETKNV DCGEPAGGSV WRKESIINPT AVIRSVCVRD MGTEMTPIGS QEPSRTGTPV RATTPVGRSP VTSPVRASHS
201: VEAVRTETVV TEGRSVASDN NEKIRYGENN NDNKAMNAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEL KKMEVKAERM KARAEEKLAN
301: KLAATKRIAE ERRANAEAKL NEKAVRTSER ADYIRRSGHL PSSFSFKIPS FSLCW
101: QREREGEDQY VEYDEEDGAA GRPEVETKNV DCGEPAGGSV WRKESIINPT AVIRSVCVRD MGTEMTPIGS QEPSRTGTPV RATTPVGRSP VTSPVRASHS
201: VEAVRTETVV TEGRSVASDN NEKIRYGENN NDNKAMNAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEL KKMEVKAERM KARAEEKLAN
301: KLAATKRIAE ERRANAEAKL NEKAVRTSER ADYIRRSGHL PSSFSFKIPS FSLCW
001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
Arabidopsis Description
F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.