Factsheet for GSMUA_Achr9P07790_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P17060_001	Banana	nucleus	77.07	70.14
Zm00001d050790_P003	Maize	nucleus	59.55	55.16
TraesCS4A01G238400.1	Wheat	nucleus	60.83	54.73
TraesCS4D01G075000.1	Wheat	nucleus	61.15	54.39
HORVU4Hr1G012760.3	Barley	nucleus	60.51	54.13
TraesCS4B01G076500.1	Wheat	nucleus	60.51	53.67
VIT_01s0010g02560.t01	Wine grape	nucleus	60.83	53.2
OQU85140	Sorghum	cytosol	59.87	52.37
PGSC0003DMT400044982	Potato	nucleus	55.73	50.29
CDY01823	Canola	nucleus	56.37	50.0
Solyc05g014710.2.1	Tomato	nucleus	55.41	49.71
CDX96080	Canola	nucleus	56.05	49.58
CDY12657	Canola	cytosol	55.73	49.58
CDY32543	Canola	nucleus	55.73	49.58
AT1G67590.1	Thale cress	nucleus	54.78	49.57
Bra033989.1-P	Field mustard	cytosol	55.73	49.3
KRH42640	Soybean	nucleus	55.73	47.68
KRH58742	Soybean	nucleus	55.41	47.41
Bra004237.1-P	Field mustard	nucleus	46.5	45.91
Zm00001d051005_P001	Maize	mitochondrion, nucleus	42.04	42.44
EES05380	Sorghum	mitochondrion	41.4	39.04
GSMUA_Achr5P11780_001	Banana	cytosol	33.12	32.2
Os02t0602000-01	Rice	mitochondrion	33.44	30.88
GSMUA_Achr2P10980_001	Banana	nucleus	35.67	26.6
GSMUA_Achr1P02030_001	Banana	nucleus	37.9	24.29
GSMUA_Achr11P...	Banana	nucleus	37.9	24.24
GSMUA_Achr4P33120_001	Banana	nucleus	20.7	23.9
GSMUA_Achr5P19220_001	Banana	nucleus	31.53	23.4
GSMUA_Achr6P00160_001	Banana	nucleus	20.06	23.25
GSMUA_Achr2P13770_001	Banana	cytosol, nucleus, plastid	20.7	23.21
GSMUA_Achr5P26590_001	Banana	nucleus	31.21	19.25
GSMUA_Achr10P...	Banana	nucleus	25.8	18.0
GSMUA_Achr10P...	Banana	nucleus	29.62	17.16
GSMUA_Achr2P07310_001	Banana	nucleus	26.11	16.47

Protein Annotations

EnsemblPlants:GSMUA_Achr9P07790_001	EnsemblPlants:GSMUA_Achr9T07790_001	EnsemblPlantsGene:GSMUA_Achr9G07790_001	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF15	PFAM:PF03763	SEG:seg	UniParc:UPI0002955691	UniProt:M0TYD8	MapMan:35.2

Description

remorin family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G07790_001]

Coordinates

chr9:+:4987745..4989922

Molecular Weight (calculated)

35119.2 Da

IEP (calculated)

9.499

GRAVY (calculated)

-0.850

Length

314 amino acids

Sequence
(BLAST)

001: MDKPCANAYS FEFHDGAVAN NALHRRKVLG SRSKPTPSKW DDAQKWLVGL SGSGDHKHAV SKPRNSNADD RRLLSSLSQR GRDSCSSADG TLEYDIVLAV
101: TAQEDEGETK KIDCSEALWR TNKPIEDSSM VVRSVCLRDA GTEMTPIASK EPSRTGTPLR ATTPVAERIG WPYGGEAEVD GGKFSEINGS EQGRSSSSLE
201: SRAMAWDEAE RAKYMARYKR EEVKIQAWEN HEKRKAEMVM RRMEVKAERI KSRAQEKYAN KLAAARRMAE EKRASAEVKL NERAAMTSER ADYIRRTGHL
301: PSSIFSFKLP SLCN

Best Arabidopsis Sequence Match ( AT1G67590.1 )
(BLAST)

001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ

Arabidopsis Description

F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.