Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P33120_001 | Banana | nucleus | 79.34 | 79.04 |
| Solyc10g080240.1.1 | Tomato | cytosol | 14.02 | 76.0 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 73.8 | 71.43 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 60.89 | 60.89 |
| Zm00001d006626_P001 | Maize | nucleus | 56.46 | 58.62 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 53.51 | 57.09 |
| Zm00001d034558_P001 | Maize | nucleus | 52.4 | 54.62 |
| KRG95278 | Soybean | nucleus | 53.51 | 53.51 |
| Zm00001d021839_P001 | Maize | nucleus | 57.93 | 53.4 |
| PGSC0003DMT400060978 | Potato | nucleus | 56.83 | 52.56 |
| Os03t0808300-01 | Rice | plasma membrane | 54.61 | 52.11 |
| Os07t0569100-01 | Rice | plasma membrane | 60.15 | 51.58 |
| EER99573 | Sorghum | nucleus | 58.67 | 50.8 |
| OQU90788 | Sorghum | nucleus | 54.24 | 50.34 |
| Solyc04g015520.2.1 | Tomato | nucleus | 56.09 | 50.16 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 56.83 | 49.84 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 56.83 | 49.52 |
| KRH71974 | Soybean | nucleus | 54.61 | 49.5 |
| Solyc10g080230.1.1 | Tomato | cytosol | 28.78 | 49.37 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 56.09 | 49.35 |
| KRH33097 | Soybean | nucleus | 53.51 | 48.99 |
| Os07t0208600-01 | Rice | nucleus | 46.49 | 48.09 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 53.51 | 47.54 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 53.87 | 47.4 |
| PGSC0003DMT400070037 | Potato | nucleus | 55.35 | 47.32 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 53.14 | 47.06 |
| AT2G41870.1 | Thale cress | nucleus | 47.23 | 46.72 |
| CDX79905 | Canola | nucleus | 45.39 | 45.72 |
| CDX72021 | Canola | nucleus | 45.76 | 45.59 |
| Bra004657.1-P | Field mustard | cytosol | 45.39 | 45.56 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 46.49 | 45.32 |
| CDY48774 | Canola | nucleus | 45.02 | 45.19 |
| CDY06095 | Canola | nucleus | 48.34 | 44.71 |
| Bra007335.1-P | Field mustard | nucleus | 48.34 | 44.71 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 45.39 | 44.4 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 46.13 | 44.01 |
| KRH66963 | Soybean | nucleus | 36.53 | 44.0 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 44.65 | 43.53 |
| AT3G57540.1 | Thale cress | nucleus | 47.23 | 43.24 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 49.45 | 43.23 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 52.77 | 42.31 |
| GSMUA_Achr5P11780_001 | Banana | cytosol | 24.72 | 20.74 |
| GSMUA_Achr9P07790_001 | Banana | nucleus | 23.25 | 20.06 |
| GSMUA_Achr3P17060_001 | Banana | nucleus | 22.51 | 17.68 |
| GSMUA_Achr2P10980_001 | Banana | nucleus | 26.57 | 17.1 |
| GSMUA_Achr1P02030_001 | Banana | nucleus | 28.04 | 15.51 |
| GSMUA_Achr11P... | Banana | nucleus | 26.94 | 14.87 |
| GSMUA_Achr5P19220_001 | Banana | nucleus | 22.88 | 14.66 |
| GSMUA_Achr5P26590_001 | Banana | nucleus | 23.99 | 12.77 |
| GSMUA_Achr10P... | Banana | nucleus | 19.93 | 12.0 |
| GSMUA_Achr2P07310_001 | Banana | nucleus | 21.77 | 11.85 |
| GSMUA_Achr10P... | Banana | nucleus | 20.66 | 10.33 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P00160_001 | EnsemblPlants:GSMUA_Achr6T00160_001 | EnsemblPlantsGene:GSMUA_Achr6G00160_001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF7 | PFAM:PF03763 | SEG:seg | UniParc:UPI000296A69C | UniProt:M0T2W4 | MapMan:35.1 |
Description
remorin, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G00160_001]
Coordinates
chr6:-:135255..136391
Molecular Weight (calculated)
29606.4 Da
IEP (calculated)
7.328
GRAVY (calculated)
-0.851
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNDHRHRAS AAAPAPAAAA EHEEGPSDSA EFRDIHALTP PSHPSRGRRR ELWEGGSHRS SSLSIGSDAA SEGFTTMSRE FNAMVVAGST MPNDGGNGGN
101: VDDGPQNQLA RIGEDELEET NPLAIVPDNN PFPSPRRPPP EIDSAASSSA DEVRVHLVKK EEVESKISAW QTAEVAKINN RFKREEAIIN GWESEQVEKA
201: TARLKKIERK LDEQRARAME KMQNDVAKAH QKAAEKRASA EAKRGTKVAK AFELGNFLRA VGRAPSKRSF F
101: VDDGPQNQLA RIGEDELEET NPLAIVPDNN PFPSPRRPPP EIDSAASSSA DEVRVHLVKK EEVESKISAW QTAEVAKINN RFKREEAIIN GWESEQVEKA
201: TARLKKIERK LDEQRARAME KMQNDVAKAH QKAAEKRASA EAKRGTKVAK AFELGNFLRA VGRAPSKRSF F
001: MLTLYGQERS PENSTTSTTD ASDRRDETPS SEIVVRDIHA MTTTTELTRP QQRGSGGGYL SPSRSIAFSD GTTSSGENFT TVSREFNALV IAGSSMDNNS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q93YN8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.