Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P11780_001 | Banana | cytosol | 41.13 | 53.87 |
| GSMUA_Achr11P... | Banana | nucleus | 60.05 | 51.73 |
| GSMUA_Achr2P10980_001 | Banana | nucleus | 48.46 | 48.69 |
| GSMUA_Achr1P02030_001 | Banana | nucleus | 54.14 | 46.73 |
| CDY09386 | Canola | nucleus | 41.13 | 43.39 |
| Bra026612.1-P | Field mustard | nucleus | 42.32 | 43.13 |
| VIT_01s0010g01760.t01 | Wine grape | nucleus | 51.3 | 42.55 |
| CDY15819 | Canola | nucleus | 43.26 | 41.4 |
| CDY17607 | Canola | nucleus | 43.03 | 40.99 |
| CDY03066 | Canola | nucleus | 39.01 | 40.94 |
| Bra024828.1-P | Field mustard | nucleus | 43.03 | 40.44 |
| KRH42459 | Soybean | nucleus | 48.46 | 40.2 |
| TraesCS6A01G046400.1 | Wheat | nucleus | 47.99 | 39.96 |
| TraesCS6B01G062500.1 | Wheat | nucleus | 47.99 | 39.96 |
| KRH58560 | Soybean | nucleus | 47.52 | 39.65 |
| TraesCS6D01G053500.1 | Wheat | nucleus | 47.52 | 39.49 |
| HORVU0Hr1G040310.2 | Barley | cytosol, mitochondrion, nucleus | 47.75 | 39.3 |
| Os02t0116800-01 | Rice | nucleus | 47.04 | 39.02 |
| AT2G02170.2 | Thale cress | nucleus | 44.44 | 38.68 |
| Os03t0120200-01 | Rice | nucleus | 37.83 | 37.83 |
| Zm00001d027403_P001 | Maize | nucleus | 37.59 | 37.5 |
| Solyc01g008180.2.1 | Tomato | nucleus | 45.86 | 37.16 |
| KXG40319 | Sorghum | nucleus | 37.12 | 37.03 |
| TraesCS4B01G349100.1 | Wheat | nucleus | 36.88 | 36.79 |
| TraesCS4D01G343800.1 | Wheat | nucleus | 36.41 | 36.49 |
| Zm00001d048481_P001 | Maize | cytosol, mitochondrion, nucleus | 35.93 | 36.1 |
| TraesCS5A01G517700.1 | Wheat | nucleus | 35.93 | 36.02 |
| Zm00001d054034_P001 | Maize | nucleus | 44.92 | 34.48 |
| EES06158 | Sorghum | nucleus, plastid | 46.34 | 34.39 |
| GSMUA_Achr9P07790_001 | Banana | nucleus | 23.4 | 31.53 |
| HORVU4Hr1G085140.6 | Barley | nucleus, plastid | 35.46 | 31.06 |
| GSMUA_Achr3P17060_001 | Banana | nucleus | 23.4 | 28.7 |
| GSMUA_Achr5P26590_001 | Banana | nucleus | 29.55 | 24.56 |
| GSMUA_Achr10P... | Banana | nucleus | 30.26 | 23.62 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 14.66 | 22.88 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 14.42 | 22.43 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 14.18 | 21.43 |
| GSMUA_Achr10P... | Banana | nucleus | 20.33 | 19.11 |
| GSMUA_Achr2P07310_001 | Banana | nucleus | 20.09 | 17.07 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P19220_001 | EnsemblPlants:GSMUA_Achr5T19220_001 | EnsemblPlantsGene:GSMUA_Achr5G19220_001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF1 | PFAM:PF03763 | SEG:seg | UniParc:UPI0002956C86 | UniProt:M0SZV1 | MapMan:35.2 |
Description
remorin family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G19220_001]
Coordinates
chr5:-:20772091..20775038
Molecular Weight (calculated)
46233.1 Da
IEP (calculated)
9.653
GRAVY (calculated)
-0.581
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESCKNVES SISTEEEYAV EVPKFGAQDK DGSCRESLEL QKSERAPPQR LASAMVVPFS RPAPSKWDDA QKWITGPASN RVGSKAGGGT MKKSRLAGNG
101: GGRGTTAKVI LEVGRQAKKE IGGVKGGNWA AELYAMVDSG MKPATTMENP ATEIAVSLSQ HDPLVSVKKV AAFIAPTLPI RSASMRDMGT EMFPIPSQEP
201: LQTGSPARET SPPTSSRPST SGKTVPASTG QLQTAPAACR DDLNKTQSEE EILKKACREI MILGRQLDNE NIAACASKEE ETDASISLKA IPQNQSMRSV
301: IEARAAAWEE AEQAKYLARF KREEIKIYAW KNHQKAKIEA EMKKIEVEVE RTRAHALERL MNKVAAASHK AEKMRAAAQA QRNYQAATTG KQAEYIRRTG
401: RIPSFFYWSC CFKPSSLLKY DVF
101: GGRGTTAKVI LEVGRQAKKE IGGVKGGNWA AELYAMVDSG MKPATTMENP ATEIAVSLSQ HDPLVSVKKV AAFIAPTLPI RSASMRDMGT EMFPIPSQEP
201: LQTGSPARET SPPTSSRPST SGKTVPASTG QLQTAPAACR DDLNKTQSEE EILKKACREI MILGRQLDNE NIAACASKEE ETDASISLKA IPQNQSMRSV
301: IEARAAAWEE AEQAKYLARF KREEIKIYAW KNHQKAKIEA EMKKIEVEVE RTRAHALERL MNKVAAASHK AEKMRAAAQA QRNYQAATTG KQAEYIRRTG
401: RIPSFFYWSC CFKPSSLLKY DVF
001: MDYERIGKTQ VTSSGGGFSP GKLRSMLLLG VDRKKNEEEE STPTMRSGSN QIDDPRVYVA SGLDDCKDVD VVSEITDCST SGIARSISLG LQEYSDYDNV
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
Arabidopsis Description
At2g02170/F5O4.6 [Source:UniProtKB/TrEMBL;Acc:Q9ZUM1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.