Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plasma membrane 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g080240.1.1 | Tomato | cytosol | 14.29 | 80.0 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 71.43 | 73.8 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 70.71 | 72.79 |
| Zm00001d006626_P001 | Maize | nucleus | 53.21 | 57.09 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 51.79 | 57.09 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 54.29 | 56.09 |
| Zm00001d034558_P001 | Maize | nucleus | 51.43 | 55.38 |
| Zm00001d021839_P001 | Maize | nucleus | 56.43 | 53.74 |
| Os03t0808300-01 | Rice | plasma membrane | 53.93 | 53.17 |
| KRG95278 | Soybean | nucleus | 51.43 | 53.14 |
| EER99573 | Sorghum | nucleus | 56.79 | 50.8 |
| Os07t0569100-01 | Rice | plasma membrane | 56.43 | 50.0 |
| Solyc04g015520.2.1 | Tomato | nucleus | 53.93 | 49.84 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 54.64 | 49.51 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 54.29 | 49.35 |
| OQU90788 | Sorghum | nucleus | 51.43 | 49.32 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 54.64 | 49.2 |
| KRH71974 | Soybean | nucleus | 52.14 | 48.83 |
| PGSC0003DMT400060978 | Potato | nucleus | 51.07 | 48.81 |
| KRH33097 | Soybean | nucleus | 51.07 | 48.31 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 51.79 | 47.54 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 52.14 | 47.4 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 51.79 | 47.39 |
| Os07t0208600-01 | Rice | nucleus | 44.29 | 47.33 |
| PGSC0003DMT400070037 | Potato | nucleus | 53.21 | 47.0 |
| Solyc10g080230.1.1 | Tomato | cytosol | 25.71 | 45.57 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 44.29 | 44.6 |
| AT2G41870.1 | Thale cress | nucleus | 43.57 | 44.53 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 43.57 | 44.04 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 44.64 | 44.01 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 43.57 | 43.88 |
| CDX79905 | Canola | nucleus | 42.14 | 43.87 |
| Bra004657.1-P | Field mustard | cytosol | 42.14 | 43.7 |
| CDX72021 | Canola | nucleus | 42.14 | 43.38 |
| CDY48774 | Canola | nucleus | 41.79 | 43.33 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 47.5 | 42.9 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 51.79 | 42.9 |
| KRH66963 | Soybean | nucleus | 34.29 | 42.67 |
| CDY06095 | Canola | nucleus | 44.29 | 42.32 |
| Bra007335.1-P | Field mustard | nucleus | 44.29 | 42.32 |
| AT3G57540.1 | Thale cress | nucleus | 43.93 | 41.55 |
| GSMUA_Achr9P07790_001 | Banana | nucleus | 23.21 | 20.7 |
| GSMUA_Achr5P11780_001 | Banana | cytosol | 23.21 | 20.12 |
| GSMUA_Achr3P17060_001 | Banana | nucleus | 21.79 | 17.68 |
| GSMUA_Achr2P10980_001 | Banana | nucleus | 23.57 | 15.68 |
| GSMUA_Achr1P02030_001 | Banana | nucleus | 25.71 | 14.69 |
| GSMUA_Achr11P... | Banana | nucleus | 25.71 | 14.66 |
| GSMUA_Achr5P19220_001 | Banana | nucleus | 21.43 | 14.18 |
| GSMUA_Achr5P26590_001 | Banana | nucleus | 23.57 | 12.97 |
| GSMUA_Achr10P... | Banana | nucleus | 20.36 | 12.67 |
| GSMUA_Achr2P07310_001 | Banana | nucleus | 21.79 | 12.25 |
| GSMUA_Achr10P... | Banana | nucleus | 20.0 | 10.33 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P13770_001 | EnsemblPlants:GSMUA_Achr2T13770_001 | EnsemblPlantsGene:GSMUA_Achr2G13770_001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF7 | PFAM:PF03763 | SEG:seg | UniParc:UPI000295788C | UniProt:M0S7R8 | MapMan:35.1 |
Description
Putative Remorin [Source:GMGC_GENE;Acc:GSMUA_Achr2G13770_001]
Coordinates
chr2:+:15798267..15799412
Molecular Weight (calculated)
30818.7 Da
IEP (calculated)
5.759
GRAVY (calculated)
-0.757
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNDQRHRIN AVTPTTITAA PADDDDDHEG PSDNDEFRDI YPLATPSYPS RGRRREIWDG GSYPSSSLSV RSDAAVVENF TTMSREFSAM VVAGSTMHND
101: SNSSSSNNNN VDGGQNQLVR IGEDALEETN PLAIVPDSNP IPSPRRPPPG GDSAAADSVD ELAVHLVMKE EVESRISAWQ TAEVAKINNR CKRQEVIING
201: WESEQVEKAS AWLKKVERKL DEQRAKAIEK MQNDVANAHK KAAEKKASAE AKRGTKVARV FELANFMRAV GRAPSKRSFF
101: SNSSSSNNNN VDGGQNQLVR IGEDALEETN PLAIVPDSNP IPSPRRPPPG GDSAAADSVD ELAVHLVMKE EVESRISAWQ TAEVAKINNR CKRQEVIING
201: WESEQVEKAS AWLKKVERKL DEQRAKAIEK MQNDVANAHK KAAEKKASAE AKRGTKVARV FELANFMRAV GRAPSKRSFF
001: MLTLYGQERS PENSTTSTTD ASDRRDETPS SEIVVRDIHA MTTTTELTRP QQRGSGGGYL SPSRSIAFSD GTTSSGENFT TVSREFNALV IAGSSMDNNS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q93YN8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.