Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G477500.1 | Wheat | nucleus | 95.78 | 96.72 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 95.78 | 96.41 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 90.91 | 82.84 |
| Zm00001d034558_P001 | Maize | nucleus | 65.26 | 77.31 |
| Os03t0808300-01 | Rice | plasma membrane | 68.51 | 74.3 |
| OQU90788 | Sorghum | nucleus | 66.56 | 70.21 |
| Solyc10g080240.1.1 | Tomato | cytosol | 11.36 | 70.0 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 47.4 | 53.87 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 46.43 | 52.57 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 47.4 | 52.14 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 51.3 | 50.8 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 43.51 | 49.45 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 44.48 | 48.24 |
| KRG95278 | Soybean | nucleus | 41.23 | 46.86 |
| AT2G41870.1 | Thale cress | nucleus | 41.23 | 46.35 |
| KRH71974 | Soybean | nucleus | 43.51 | 44.82 |
| Bra004657.1-P | Field mustard | cytosol | 38.96 | 44.44 |
| PGSC0003DMT400060978 | Potato | nucleus | 42.21 | 44.37 |
| Solyc10g080230.1.1 | Tomato | cytosol | 22.73 | 44.3 |
| CDX79905 | Canola | nucleus | 38.64 | 44.24 |
| CDY48774 | Canola | nucleus | 38.64 | 44.07 |
| KRH33097 | Soybean | nucleus | 42.21 | 43.92 |
| Solyc04g015520.2.1 | Tomato | nucleus | 43.18 | 43.89 |
| CDX72021 | Canola | nucleus | 37.99 | 43.01 |
| PGSC0003DMT400070037 | Potato | nucleus | 44.16 | 42.9 |
| CDY06095 | Canola | nucleus | 39.94 | 41.98 |
| Bra007335.1-P | Field mustard | nucleus | 39.94 | 41.98 |
| AT3G57540.1 | Thale cress | nucleus | 38.64 | 40.2 |
| KRH66963 | Soybean | nucleus | 27.27 | 37.33 |
| TraesCS4A01G238400.1 | Wheat | nucleus | 22.4 | 19.77 |
| TraesCS5A01G517700.1 | Wheat | nucleus | 21.1 | 15.4 |
| TraesCS6A01G046400.1 | Wheat | nucleus | 23.38 | 14.17 |
| TraesCS2A01G464000.1 | Wheat | nucleus, plastid | 18.51 | 10.84 |
| TraesCS5A01G040500.1 | Wheat | nucleus | 15.58 | 10.69 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G464900.1 | EnsemblPlantsGene:TraesCS5A01G464900 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF7 |
| PFAM:PF03763 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5A:+:644120610..644122292
Molecular Weight (calculated)
33303.5 Da
IEP (calculated)
5.630
GRAVY (calculated)
-0.733
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHERHAPPS ASDDEDDALG ANDEEGTLVT TTASTTNTTF HDVDEVIEVR EVHPLSPPHP PFTPPTRTLS AASTAWDSAS SHRSVTSEEQ FMTMSREFTA
101: MVAAGAGTGA ANSNPNSNNS NSNHHPGGPY DGGPDQLTSI GEDELEEHNP LAIVPDSGRP FATPPSRSGG SSGRAARLDL EVVPAAGPPV EASQVKKEEV
201: ETKVSAWQTA EIAKINNRFK REEVVINGWE TEQVDKASAW LKKIERKLDE QRAKAVEKTQ NDVAKARHKA EEKRASAEAK RGLKLAKVLE LANFMKAVGR
301: VPTKRSFF
101: MVAAGAGTGA ANSNPNSNNS NSNHHPGGPY DGGPDQLTSI GEDELEEHNP LAIVPDSGRP FATPPSRSGG SSGRAARLDL EVVPAAGPPV EASQVKKEEV
201: ETKVSAWQTA EIAKINNRFK REEVVINGWE TEQVDKASAW LKKIERKLDE QRAKAVEKTQ NDVAKARHKA EEKRASAEAK RGLKLAKVLE LANFMKAVGR
301: VPTKRSFF
001: MLTLYHQERS PDATSNDRDE TPETVVREVH ALTPAPEDNS RTMTATLPPP PAFRGYFSPP RSATTMSEGE NFTTISREFN ALVIAGSSME NNELMTRDVT
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
Arabidopsis Description
Putative DNA binding protein [Source:UniProtKB/TrEMBL;Acc:P93758]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.